Difference between revisions of "MediaWiki:Gadget-calculator-drugs-core.js"
From WikiAnesthesia
Chris Rishel (talk | contribs) |
Chris Rishel (talk | contribs) |
||
Line 3: | Line 3: | ||
*/ | */ | ||
( function() { | ( function() { | ||
var | var DEFAULT_DRUG_COLOR = 'default'; | ||
var DEFAULT_DRUG_POPULATION = 'general'; | |||
mw.calculators.isValueDependent = function( value, variableId ) { | |||
// This may need generalized to support other variables in the future | |||
if( variableId === 'weight' ) { | |||
return value && value.formatUnits().match( /\/[\s(]*?kg/ ); | |||
} else { | |||
throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' ); | |||
} | |||
}; | |||
/** | |||
* Define units | |||
*/ | |||
mw.calculators.addUnitsBases( { | |||
concentration: { | |||
toString: function( units ) { | |||
units = units.replace( ' pct', '%' ); | |||
return units; | |||
return | |||
} | } | ||
} | } | ||
} ); | |||
mw.calculators.addUnits( { | |||
pct: { | |||
baseName: 'concentration', | |||
definition: '10 mg/mL' | |||
mw.calculators | |||
}, | }, | ||
vial: { | |||
baseName: 'VOLUME' | |||
} | |||
} ); | |||
/** | |||
* DrugColor | |||
*/ | |||
mw.calculators.drugColors = {}; | |||
mw.calculators.addDrugColors = function( drugColorData ) { | |||
var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData ); | |||
for( var drugColorId in drugColors ) { | |||
mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ]; | |||
} | |||
}; | |||
mw.calculators.getDrugColor = function( drugColorId ) { | |||
if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) { | |||
return mw.calculators.drugColors[ drugColorId ]; | |||
} | } else { | ||
return null; | |||
} | |||
}; | |||
/** | |||
* Class DrugColor | |||
* @param {Object} propertyValues | |||
} | * @returns {mw.calculators.objectClasses.DrugColor} | ||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugColor = function( propertyValues ) { | |||
var properties = { | |||
required: [ | |||
'id' | |||
], | |||
optional: [ | |||
'parentColor', | |||
'primaryColor', | |||
'highlightColor', | |||
'striped' | |||
] | |||
}; | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() { | |||
if( !this.parentColor ) { | |||
return null; | |||
} | |||
var parentDrugColor = mw.calculators.getDrugColor( this.parentColor ); | |||
if( !parentDrugColor ) { | |||
throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' ); | |||
} | |||
return parentDrugColor; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() { | |||
if( this.highlightColor ) { | |||
return this.highlightColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getHighlightColor(); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() { | |||
} | if( this.primaryColor ) { | ||
return this.primaryColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getPrimaryColor(); | |||
} | |||
}; | |||
return | mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() { | ||
} | if( this.striped !== null ) { | ||
return this.striped; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().isStriped(); | |||
} | |||
}; | |||
/** | |||
* DrugPopulation | |||
*/ | |||
mw.calculators.drugPopulations = {}; | |||
mw.calculators.addDrugPopulations = function( drugPopulationData ) { | |||
var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData ); | |||
for( var drugPopulationId in drugPopulations ) { | |||
mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ]; | |||
} | |||
}; | |||
mw.calculators.getDrugPopulation = function( drugPopulationId ) { | |||
if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) { | |||
return mw.calculators.drugPopulations[ drugPopulationId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | |||
} | * Class DrugPopulation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPopulation} | |||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) { | |||
var properties = { | |||
required: [ | |||
'id', | |||
'name' | |||
], | |||
optional: [ | |||
'abbreviation', | |||
'variables' | |||
] | |||
}; | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
if( this.variables ) { | |||
if( mw.calculators. | for( var variableId in this.variables ) { | ||
if( !mw.calculators.getVariable( variableId ) ) { | |||
throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' ); | |||
} | } | ||
this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ? | |||
math.unit( this.variables[ variableId ].min ) : null; | |||
this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ? | |||
math.unit( this.variables[ variableId ].max ) : null; | |||
} | } | ||
} else { | |||
this.variables = {}; | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
for( var variableId in this.variables ) { | |||
inputData.variables.required.push( variableId ); | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) { | |||
// A return value of -1 indicates the data did not match the population definition | |||
for( var variableId in this.variables ) { | |||
if( !dataValues.hasOwnProperty( variableId ) ) { | |||
return -1; | |||
if( | |||
return | |||
} | } | ||
if( this.variables[ variableId ].min && | |||
!math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) { | |||
return -1; | |||
return | |||
} | } | ||
if( | if( this.variables[ variableId ].max && | ||
!math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) { | |||
return -1; | |||
return | |||
} | } | ||
} | |||
// If the data matches the population definition, the score corresponds to the number of variables in the | |||
// population definition. This should roughly correspond to the specificity of the population. | |||
return Object.keys( this.variables ).length; | |||
}; | }; | ||
mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
} | |||
/** | |||
* DrugIndication | |||
*/ | |||
mw.calculators.drugIndications = {}; | |||
mw.calculators.addDrugIndications = function( drugIndicationData ) { | |||
var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData ); | |||
for( var drugIndicationId in drugIndications ) { | |||
mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ]; | |||
} | } | ||
}; | }; | ||
mw.calculators. | mw.calculators.getDrugIndication = function( drugIndicationId ) { | ||
if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) { | |||
return mw.calculators.drugIndications[ drugIndicationId ]; | |||
} else { | |||
} | return null; | ||
} | |||
}; | }; | ||
/** | /** | ||
* Class | * Class DrugIndication | ||
* @param {Object} propertyValues | * @param {Object} propertyValues | ||
* @returns {mw.calculators.objectClasses. | * @returns {mw.calculators.objectClasses.DrugIndication} | ||
* @constructor | * @constructor | ||
*/ | */ | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugIndication = function( propertyValues ) { | ||
var properties = { | var properties = { | ||
required: [ | required: [ | ||
'id' | 'id', | ||
'name' | |||
], | ], | ||
optional: [ | optional: [ | ||
' | 'abbreviation' | ||
] | ] | ||
}; | }; | ||
Line 406: | Line 277: | ||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | ||
mw.calculators.objectClasses.DrugIndication.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
Line 412: | Line 288: | ||
/** | /** | ||
* | * Drug | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugs = {}; | ||
var | |||
mw.calculators.addDrugs = function( drugData ) { | |||
var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData ); | |||
mw.calculators. | for( var drugId in drugs ) { | ||
mw.calculators.drugs[ drugId ] = drugs[ drugId ]; | |||
} | |||
}; | }; | ||
mw.calculators. | mw.calculators.addDrugDosages = function( drugId, drugDosageData ) { | ||
var drug = mw.calculators.getDrug( drugId ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' ); | |||
} | |||
drug.addDosages( drugDosageData ); | |||
var calculationId = 'drugDosage-' + drugId; | |||
var calculation = mw.calculators.getCalculation( calculationId ); | |||
if( !calculation ) { | |||
var calculationData = {}; | |||
calculationData[ calculationId ] = { | |||
calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate, | |||
drug: drugId, | |||
type: 'drug' | |||
}; | |||
mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' ); | |||
calculation = mw.calculators.getCalculation( calculationId ); | |||
} | |||
calculation.setDependencies(); | |||
}; | |||
mw.calculators.getDrug = function( drugId ) { | |||
if( mw.calculators.drugs.hasOwnProperty( drugId ) ) { | |||
return mw.calculators.drugs[ drugId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* Class | * Class Drug | ||
* @param {Object} propertyValues | * @param {Object} propertyValues | ||
* @returns {mw.calculators.objectClasses. | * @returns {mw.calculators.objectClasses.Drug} | ||
* @constructor | * @constructor | ||
*/ | */ | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.Drug = function( propertyValues ) { | ||
var properties = { | var properties = { | ||
required: [ | required: [ | ||
'id', | 'id', | ||
'name | 'name' | ||
], | ], | ||
optional: [ | optional: [ | ||
' | 'color' | ||
] | ] | ||
}; | }; | ||
Line 463: | Line 358: | ||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | ||
if( | if( !this.color ) { | ||
this.color = DEFAULT_DRUG_COLOR; | |||
} | } | ||
var color = mw.calculators.getDrugColor( this.color ); | |||
if( !color ) { | |||
throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' ); | |||
this. | |||
} | } | ||
this. | this.color = color; | ||
this.dosages = []; | |||
this.preparations = []; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.Drug.prototype.addDosages = function( drugDosageData ) { | ||
var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', drugDosageData ); | |||
this. | for( var dosageId in dosages ) { | ||
dosages[ dosageId ].id = this.dosages.length; | |||
this.dosages.push( dosages[ dosageId ] ); | |||
} | } | ||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getIndications = function() { | |||
var indications = []; | |||
var | for( var iDosage in this.dosages ) { | ||
if( this.dosages[ iDosage ].indication ) { | |||
indications.push( this.dosages[ iDosage ].indication ); | |||
} | |||
} | } | ||
return indications.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) { | |||
var populations = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].population && | |||
if( this. | ( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { | ||
populations.push( this.dosages[ iDosage ].population ); | |||
} | } | ||
} | |||
return populations.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPreparations = function() { | |||
return this.preparations.filter( mw.calculators.uniqueValues ); | |||
}; | |||
/** | |||
* DrugPreparation | |||
*/ | |||
mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) { | |||
if( !mw.calculators.getDrug( drugId ) ) { | |||
throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' ); | |||
} | |||
for( var drugPreparationId in drugPreparationData ) { | |||
drugPreparationData[ drugPreparationId ].drug = drugId; | |||
} | |||
var drugPreparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', drugPreparationData ); | |||
for( var drugPreparationId in drugPreparations ) { | |||
mw.calculators.drugs[ drugId ].preparations[ drugPreparationId ] = drugPreparations[ drugPreparationId ]; | |||
} | |||
}; | |||
/** | |||
* Class DrugPreparation | |||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPreparation} | |||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) { | |||
var properties = { | |||
required: [ | |||
'drug', | |||
'id', | |||
'concentration' | |||
], | |||
optional: [ | |||
'dilutionRequired', | |||
'commonDilution' | |||
] | |||
}; | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
this.concentration = this.concentration.replace( 'mcg', 'ug' ); | |||
this.concentration = math.unit( this.concentration ); | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() { | |||
// The units of concentration will always be of the form "mass / volume" | |||
// The regular expression matches all text leading up to the volume units | |||
return this.concentration.formatUnits().replace( /.*\/\s?/, '' ); | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() { | |||
return mw.calculators.getValueString( this.concentration ); | |||
}; | |||
/** | |||
* Class DrugDosage | |||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosage} | |||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugDosage = function( propertyValues ) { | |||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
var drugIndication = mw.calculators.getDrugIndication( this.indication ); | |||
if( !drugIndication ) { | |||
throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' ); | |||
} | } | ||
this.indication = drugIndication; | |||
this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION; | |||
var drugPopulation = mw.calculators.getDrugPopulation( this.population ); | |||
if( !drugPopulation ) { | |||
throw new Error( 'Invalid population "' + this.population + '" for drug dosage' ); | |||
( this. | |||
} | } | ||
this.population = drugPopulation; | |||
this.route = this.route ? this.route : 'IV'; | |||
var drugDoseData = this.dose; | |||
this.dose = []; | |||
this.addDoses( drugDoseData ); | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | ||
mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) { | |||
// Each dosage can have one or more associated doses. Ensure this value is an array. | |||
if( !Array.isArray( drugDoseData ) ) { | |||
drugDoseData = [ drugDoseData ]; | |||
} | } | ||
var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData ); | |||
for( var | for( var doseId in doses ) { | ||
doses[ doseId ].id = this.dose.length; | |||
this.dose.push( doses[ doseId ] ); | |||
} | } | ||
}; | }; | ||
mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
inputData = inputData.merge( this.population.getCalculationData() ); | |||
for( var iDose in this.dose ) { | |||
inputData = inputData.merge( this.dose[ iDose ].getCalculationData() ); | |||
} | } | ||
return inputData; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() { | ||
return { | return { | ||
required: [ | required: [ | ||
'dose', | |||
'id', | 'id', | ||
' | 'indication' | ||
], | ], | ||
optional: [ | optional: [ | ||
'description', | 'description', | ||
' | 'population', | ||
' | 'route' | ||
] | ] | ||
}; | }; | ||
} | } | ||
/** | |||
* Class DrugDose | |||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDose} | |||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugDose = function( propertyValues ) { | |||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
var mathProperties = this.getMathProperties(); | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
if( this[ mathProperty ] ) { | |||
// TODO consider making a UnitsBase.weight.fromString() | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' ); | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' ); | |||
this[ mathProperty ] = math.unit( this[ mathProperty ] ); | |||
} else { | } else { | ||
this[ mathProperty ] = null; | |||
} | } | ||
} | } | ||
if( this.weightCalculation ) { | |||
var weightCalculation = mw.calculators.getCalculation( this.weightCalculation ); | |||
if( ! | if( !weightCalculation ) { | ||
throw new Error( ' | throw new Error( 'Drug dose references weight calculation "' + this.weightCalculation + '" which is not defined' ); | ||
} | |||
this.weightCalculation = weightCalculation; | |||
} | } | ||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() { | |||
var calculationData = new mw.calculators.objectClasses.CalculationData(); | |||
var mathProperties = this.getMathProperties(); | |||
// Look at dose properties to identify any variable dependence (e.g. weight-dependence) | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
var dosePropertyValue = this[ mathProperty ]; | |||
if( | // For now, this only supports weight dependence, unclear if it will need to be more generalizable in the future | ||
if( mw.calculators.isValueDependent( dosePropertyValue, 'weight' ) && | |||
calculationData.variables.optional.indexOf( 'weight' ) === -1 ) { | |||
calculationData.variables.optional.push( 'weight' ); | |||
} | } | ||
} | |||
if( this.weightCalculation ) { | |||
calculationData.calculations.optional.push( this.weightCalculation.id ); | |||
} | } | ||
return | return calculationData; | ||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() { | ||
return [ | |||
'dose', | |||
'min', | |||
'max', | |||
'absoluteMin', | |||
'absoluteMax' | |||
]; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() { | ||
return | return { | ||
required: [ | |||
'id' | |||
], | |||
optional: [ | |||
'absoluteMin', | |||
'absoluteMax', | |||
'dose', | |||
'frequency', | |||
'min', | |||
'max', | |||
'name', | |||
'weightCalculation' | |||
] | |||
}; | |||
}; | }; | ||
/** | |||
* Class DrugDosageCalculation | |||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosageCalculation} | |||
* @constructor | |||
*/ | |||
mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) { | |||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
this.initialize(); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype ); | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) { | |||
var value = { | |||
population: null, | |||
preparation: data.preparation, | |||
dose: [] | |||
}; | |||
} | |||
// Determine which dosage to use | |||
var populationScores = []; | |||
for( var iDosage in data.drug.dosages ) { | |||
var drugDosage = data.drug.dosages[ iDosage ]; | |||
// If the indication does not match, set the score to -1 | |||
var populationScore = ( drugDosage.indication.id === data.indication.id ) ? | |||
drugDosage.population.getCalculationDataScore( data ) : -1; | |||
populationScores.push( populationScore ); | |||
} | } | ||
var maxPopulationScore = Math.max.apply( null, populationScores ); | |||
if( | if( maxPopulationScore < 0 ) { | ||
return value; | |||
} | } | ||
// If there is more than one dosage with the same score, take the first. | |||
var | // This allows the data editor to decide which is most important. | ||
var dosageId = populationScores.indexOf( maxPopulationScore ); | |||
var | var dosage = data.drug.dosages[ dosageId ]; | ||
value.population = dosage.population; | |||
// A dosage may contain multiple doses (e.g. induction and maintenance) | |||
for( var iDose in dosage.dose ) { | |||
var dose = dosage.dose[ iDose ]; | |||
var mathProperties = dose.getMathProperties(); | |||
// Initialize value properties for dose | |||
value.dose[ iDose ] = { | |||
massPerWeight: { | |||
decimals: 0 | |||
}, | |||
mass: { | |||
decimals: 0 | |||
}, | |||
name: dose.name, | |||
volume: { | |||
decimals: 0 | |||
}, | |||
weightCalculation: dose.weightCalculation ? dose.weightCalculation : null | |||
}; | |||
var weightValue = dose.weightCalculation ? dose.weightCalculation.value : data.weight; | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
var doseValue = dose[ mathProperty ]; | |||
if( doseValue ) { | |||
var doseValueDecimals = mw.calculators.getValueDecimals( doseValue ); | |||
if( mw.calculators.isValueDependent( doseValue, 'weight' ) ) { | |||
value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue; | |||
// Set the decimals based upon the specified dose | |||
value.dose[ iDose ].massPerWeight.decimals = math.max( | |||
doseValueDecimals, | |||
value.dose[ iDose ].massPerWeight.decimals | |||
); | |||
// For whatever reason math.format will simplify the units, but math.formatUnits will not | |||
// as a hack, we recreate a new unit value with the correct formatting of the result | |||
value.dose[ iDose ].mass[ mathProperty ] = weightValue ? math.unit( math.multiply( doseValue, weightValue ).format() ) : null; | |||
// Mass should use one fewer decimals than massPerWeight (unless already 0) | |||
value.dose[ iDose ].mass.decimals = math.max( | |||
math.max( doseValueDecimals - 1, 0 ), | |||
value.dose[ iDose ].mass.decimals | |||
); | |||
} else { | |||
value.dose[ iDose ].mass[ mathProperty ] = doseValue; | |||
// Set the decimals based upon the specified dose | |||
value.dose[ iDose ].mass.decimals = math.max( | |||
doseValueDecimals, | |||
value.dose[ iDose ].mass.decimals | |||
); | |||
} | |||
if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) { | |||
// Same hack as above to get units to simplify correctly | |||
value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ); | |||
// value.dose[ iDose ].volume.decimals = 0; | |||
} | |||
} | |||
} | |||
} | } | ||
} | } | ||
return value; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() { | ||
var $calculationContainer = $( '.' + this.getContainerClass() ); | |||
if( !$calculationContainer.length ) { | |||
return; | |||
} | |||
$calculationContainer.empty(); | |||
// Label column | |||
var labelAttributes = {}; | |||
var labelCss = {}; | |||
if( this.drug.color.isStriped() ) { | |||
labelCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + this.drug.color.getPrimaryColor(); | |||
} else { | |||
labelCss[ 'background-color'] = this.drug.color.getPrimaryColor(); | |||
} | |||
var $label = $( '<th>', labelAttributes ).css( labelCss ); | |||
$label.append( this.getLabelHtml() ); | |||
var | var $infoButton = null; | ||
if( this.hasInfo() ) { | |||
$infoButton = $( '<a>', { | |||
'data-toggle': 'collapse', | |||
href: '#' + this.getContainerClass() + '-info', | |||
role: 'button', | |||
'aria-expanded': 'false', | |||
'aria-controls': this.getContainerClass() + '-info' | |||
} ) | |||
.append( $( '<i>', { | |||
class: 'far fa-question-circle' | |||
} ) ); | |||
$label | |||
.append( $( '<span>', { | |||
class: 'calculator-calculation-column-label-info' | |||
} ) | |||
.append( $infoButton ) | |||
. | ); | ||
} | } | ||
// Indication column | |||
var $indication = $( '<td>' ); | |||
var indications = this.drug.getIndications(); | |||
if( indications.length > 1 ) { | |||
$indication.append( mw.calculators.getVariable( this.getVariableIds().indication ).createInput({ | |||
hideLabel: true | |||
} ) ); | |||
} else { | |||
$indication.append( String( indications[ 0 ] ) ); | |||
} | |||
// Dosage column | |||
var $dosage = $( '<td>' ); | |||
var dash = '–'; | |||
var preparations = this.drug.getPreparations(); | |||
var $preparationSelect; | |||
this. | if( preparations.length > 1 ) { | ||
$preparationSelect = mw.calculators.getVariable( this.getVariableIds().preparation ).createInput({ | |||
hideLabel: true, | |||
inline: true, | |||
inputClass: 'calculator-input-preparation' | |||
} ); | |||
} else { | |||
$preparationSelect = String( preparations[ 0 ] ); | |||
} | |||
if( this.value.population && this.value.population.id !== DEFAULT_DRUG_POPULATION ) { | |||
$dosage.append( String( this.value.population ) + '<br />' ); | |||
} | |||
for( var iDose in this.value.dose ) { | |||
var doseValue = this.value.dose[ iDose ]; | |||
if( doseValue.name ) { | |||
$dosage.append( doseValue.name + '<br />' ); | |||
} | |||
var massPerWeightHtml = ''; | |||
if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) { | |||
massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose, doseValue.massPerWeight.decimals ); | |||
} else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) && | |||
doseValue.massPerWeight.hasOwnProperty( 'max' ) ) { | |||
massPerWeightHtml += mw.calculators.getValueNumber( doseValue.massPerWeight.min, doseValue.massPerWeight.decimals ); | |||
massPerWeightHtml += dash; | |||
massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.max, doseValue.massPerWeight.decimals ); | |||
} | |||
if( massPerWeightHtml ) { | |||
if( doseValue.weightCalculation ) { | |||
massPerWeightHtml += ' (' + doseValue.weightCalculation.getLabelString() + ')'; | |||
} | |||
$dosage.append( massPerWeightHtml + '<br />' ); | |||
} | } | ||
var massHtml = ''; | |||
var massUnits = ''; | |||
} ) | if( doseValue.mass.hasOwnProperty( 'dose' ) ) { | ||
massHtml += mw.calculators.getValueString( doseValue.mass.dose, doseValue.mass.decimals ); | |||
massUnits = mw.calculators.getUnitsString( doseValue.mass.dose ); | |||
} else if( doseValue.mass.hasOwnProperty( 'min' ) && | |||
doseValue.mass.hasOwnProperty( 'max' ) ) { | |||
massHtml += mw.calculators.getValueNumber( doseValue.mass.min, doseValue.mass.decimals ); | |||
massHtml += dash; | |||
massHtml += mw.calculators.getValueString( doseValue.mass.max, doseValue.mass.decimals ); | |||
massUnits = mw.calculators.getUnitsString( doseValue.mass.min ); | |||
} | |||
if( massHtml ) { | |||
$dosage.append( massHtml + '<br />' ); | |||
} | |||
var volumeHtml = ''; | |||
if( this.value.preparation ) { | |||
// Get the volume units of the preparation | |||
var volumeUnits = this.value.preparation.getVolumeUnits(); | |||
if( !$.isEmptyObject( doseValue.mass ) && massUnits ) { | |||
// Extract any remaining additional dependent units (e.g. /min) | |||
var massRemainderUnits = massUnits.replace( /.*\/?/, '' ); | |||
if( massRemainderUnits ) { | |||
volumeUnits = volumeUnits + '/' + massRemainderUnits; | |||
} | |||
} | |||
if( doseValue.volume.hasOwnProperty( 'dose' ) ) { | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.dose.to( volumeUnits ), doseValue.volume.decimals ); | |||
} else if( doseValue.volume.hasOwnProperty( 'min' ) && | |||
doseValue.volume.hasOwnProperty( 'max' ) ) { | |||
volumeHtml += mw.calculators.getValueNumber( doseValue.volume.min.to( volumeUnits ), doseValue.volume.decimals ); | |||
volumeHtml += dash; | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.max.to( volumeUnits ), doseValue.volume.decimals ); | |||
} | |||
if( volumeHtml ) { | |||
$dosage.append( volumeHtml + ' of ' ); | |||
$dosage.append( $preparationSelect ); | |||
$dosage.append( '<br />' ); | |||
} | |||
} | } | ||
} | } | ||
$calculationContainer | |||
.append( | |||
$label, | |||
$indication, | |||
$dosage | |||
); | |||
return; | |||
var calculation = this; | var calculation = this; | ||
Line 1,202: | Line 955: | ||
$( this ).empty(); | $( this ).empty(); | ||
if( calculation.hasInfo() ) { | if( calculation.hasInfo() ) { | ||
Line 1,281: | Line 998: | ||
} | } | ||
$infoContainer = $( '<tr>', { | |||
id: infoContainerId, | |||
class: 'collapse' | |||
} ) | |||
.append( $( '<td>', { | |||
colspan: 2 | |||
} ).append( infoHtml ) ); | |||
$( this ).after( $infoContainer ); | $( this ).after( $infoContainer ); | ||
} | } | ||
} ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Add variables created by this calculation | |||
var variableIds = this.getVariableIds(); | |||
for( var variableType in variableIds ) { | |||
inputData.variables.optional.push( variableIds[ variableType ] ); | |||
} | |||
var dataTypes = inputData.getDataTypes(); | |||
// Data is only actually required if it is required by every dosage for the drug. | |||
// Data marked as required by an individual dosage that does not appear in every | |||
// dosage will be converted to optional. | |||
var requiredInputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Need a way to tell the first iteration of the loop to initialize the required variables to a value that | |||
// is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't | |||
// reinitialize). | |||
var initializeRequiredData = true; | |||
// Iterate through each dosage to determine variable dependency | |||
for( var iDosage in this.drug.dosages ) { | |||
var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData(); | |||
inputData = inputData.merge( dosageInputData ); | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
if( initializeRequiredData ) { | |||
requiredInputData[ dataType ].required = inputData[ dataType ].required; | |||
} else { | } else { | ||
// Data is only truly required if it is required by all dosage calculations, so use array intersection | |||
requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) { | |||
} | return dosageInputData[ dataType ].required.indexOf( index ) !== -1; | ||
} ); | |||
} | } | ||
} | |||
initializeRequiredData = false; | |||
} | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
// Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear | |||
// in requiredInputData). | |||
inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) { | |||
return requiredInputData[ dataType ].required.indexOf( index ) === -1; | |||
} ) ).filter( mw.calculators.uniqueValues ); | |||
inputData[ dataType ].required = requiredInputData[ dataType ].required; | |||
} | |||
return inputData; | |||
}; | }; | ||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() { | |||
var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this ); | |||
data.drug = this.drug; | |||
data.indication = data[ this.getVariablePrefix() + 'indication' ] ? | |||
mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).value ) : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'indication' ]; | |||
data.preparation = data[ this.getVariablePrefix() + 'preparation' ] ? | |||
this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).value ] : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'preparation' ]; | |||
return data; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculation.prototype.getLabelHtml = function() { | ||
var labelHtml = this.drug.name; | |||
var $label = $( '<a>', { | |||
href: mw.util.getUrl( this.drug.name ), | |||
text: labelHtml | |||
} ); | |||
var highlightColor = this.drug.color.getHighlightColor(); | |||
if( highlightColor ) { | |||
$label.css( 'background-color', highlightColor ); | |||
} | |||
labelHtml = $label[ 0 ].outerHTML; | |||
return labelHtml; | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() { | ||
return | var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties(); | ||
return this.mergeProperties( inheritedProperties, { | |||
required: [ | |||
'drug' | |||
], | |||
optional: [] | |||
} ); | |||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() { | ||
return { | return { | ||
indication: this.getVariablePrefix() + 'indication', | |||
preparation: this.getVariablePrefix() + 'preparation' | |||
}; | }; | ||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() { | ||
if( | return this.drug.id + '-'; | ||
} | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() { | |||
mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this ); | |||
var drug = mw.calculators.getDrug( this.drug ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' ); | |||
} | |||
this.drug = drug; | |||
var variableIds = this.getVariableIds(); | |||
// Create variables for indication, population?, preparation select boxes? Here or m.c.addDosages() or elsewhere? | |||
// Will have to add them to getCalculationData too. | |||
var drugVariables = {}; | |||
var indications = this.drug.getIndications(); | |||
var indicationOptions = {}; | |||
for( var iIndication in indications ) { | |||
var indication = indications[ iIndication ]; | |||
indicationOptions[ indication.id ] = String( indication ); | |||
} | } | ||
this. | drugVariables[ variableIds.indication ] = { | ||
name: 'Indication', | |||
type: 'string', | |||
defaultValue: indications.length ? indications[ 0 ].id : null, | |||
options: indicationOptions | |||
}; | |||
var preparations = this.drug.getPreparations(); | |||
var preparationOptions = {}; | |||
for( var iPreparation in preparations ) { | |||
var preparation = preparations[ iPreparation ]; | |||
preparationOptions[ preparation.id ] = String( preparation ); | |||
} | } | ||
drugVariables[ variableIds.preparation ] = { | |||
name: 'Preparation', | |||
type: 'string', | |||
defaultValue: preparations.length ? preparations[ 0 ].id : null, | |||
options: preparationOptions | |||
}; | |||
mw.calculators.addVariables( drugVariables ); | |||
}; | |||
Line 1,381: | Line 1,190: | ||
/** | /** | ||
* Class | * Class DrugDosageCalculator | ||
* @param {Object} propertyValues | * @param {Object} propertyValues | ||
* @returns {mw.calculators.objectClasses. | * @returns {mw.calculators.objectClasses.DrugDosageCalculator} | ||
* @constructor | * @constructor | ||
*/ | */ | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | ||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype ); | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculator.prototype.doRender = function() { | ||
var $calculatorContainer = $( '.' + this.getContainerClass() ); | var $calculatorContainer = $( '.' + this.getContainerClass() ); | ||
Line 1,400: | Line 1,209: | ||
$calculatorContainer.addClass( this.getCalculatorClass() ); | $calculatorContainer.addClass( this.getCalculatorClass() ); | ||
$calculatorContainer.empty(); | $calculatorContainer.empty(); | ||
Line 1,411: | Line 1,216: | ||
} ) ); | } ) ); | ||
var $calculationsContainer; | var $calculationsContainer = $( '<table>', { | ||
class: 'wikitable' | |||
} ).append( '<tbody>' ); | |||
$calculatorContainer.append( $calculationsContainer ); | |||
$calculationsContainer | |||
.append( $( '<tr>' ) | |||
.append( | |||
$( '<th>', { | |||
class: this.getCalculatorClass() + '-drug' | |||
} ).text( 'Drug' ), | |||
$( '<th>', { | |||
class: this.getCalculatorClass() + '-indication' | |||
} ).text( 'Indication' ), | |||
$( '<th>', { | |||
class: this.getCalculatorClass() + '-dose' | |||
} ).text( 'Dose' ) | |||
) | |||
); | |||
for( var iCalculationId in this.calculations ) { | for( var iCalculationId in this.calculations ) { | ||
Line 1,439: | Line 1,241: | ||
var calculationContainerClass = calculation.getContainerClass(); | var calculationContainerClass = calculation.getContainerClass(); | ||
var $calculationContainer = $( ' | var $calculationContainer = $( '<tr>', { | ||
class: calculationContainerClass | |||
} ); | |||
$calculationsContainer.append( $calculationContainer ); | |||
calculation.render(); | calculation.render(); | ||
Line 1,460: | Line 1,251: | ||
}; | }; | ||
mw.calculators.objectClasses. | mw.calculators.objectClasses.DrugDosageCalculator.prototype.getCalculatorClass = function() { | ||
return 'calculator- | return 'calculator-DrugDosageCalculator'; | ||
}; | }; | ||
mw.calculators.objectClasses.DrugDosageCalculator.prototype.getProperties = function() { | |||
mw.calculators.objectClasses. | |||
var inheritedProperties = mw.calculators.objectClasses.AbstractCalculator.prototype.getProperties(); | var inheritedProperties = mw.calculators.objectClasses.AbstractCalculator.prototype.getProperties(); | ||
return this.mergeProperties( inheritedProperties, { | return this.mergeProperties( inheritedProperties, { | ||
required: [], | required: [], | ||
optional: [ | optional: [] | ||
} ); | } ); | ||
}; | }; | ||
}() ); | }() ); |
Revision as of 21:51, 11 August 2021
/** * @author Chris Rishel */ ( function() { var DEFAULT_DRUG_COLOR = 'default'; var DEFAULT_DRUG_POPULATION = 'general'; mw.calculators.isValueDependent = function( value, variableId ) { // This may need generalized to support other variables in the future if( variableId === 'weight' ) { return value && value.formatUnits().match( /\/[\s(]*?kg/ ); } else { throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' ); } }; /** * Define units */ mw.calculators.addUnitsBases( { concentration: { toString: function( units ) { units = units.replace( ' pct', '%' ); return units; } } } ); mw.calculators.addUnits( { pct: { baseName: 'concentration', definition: '10 mg/mL' }, vial: { baseName: 'VOLUME' } } ); /** * DrugColor */ mw.calculators.drugColors = {}; mw.calculators.addDrugColors = function( drugColorData ) { var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData ); for( var drugColorId in drugColors ) { mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ]; } }; mw.calculators.getDrugColor = function( drugColorId ) { if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) { return mw.calculators.drugColors[ drugColorId ]; } else { return null; } }; /** * Class DrugColor * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugColor} * @constructor */ mw.calculators.objectClasses.DrugColor = function( propertyValues ) { var properties = { required: [ 'id' ], optional: [ 'parentColor', 'primaryColor', 'highlightColor', 'striped' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR; }; mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() { if( !this.parentColor ) { return null; } var parentDrugColor = mw.calculators.getDrugColor( this.parentColor ); if( !parentDrugColor ) { throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' ); } return parentDrugColor; }; mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() { if( this.highlightColor ) { return this.highlightColor; } else if( this.parentColor ) { return this.getParentDrugColor().getHighlightColor(); } }; mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() { if( this.primaryColor ) { return this.primaryColor; } else if( this.parentColor ) { return this.getParentDrugColor().getPrimaryColor(); } }; mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() { if( this.striped !== null ) { return this.striped; } else if( this.parentColor ) { return this.getParentDrugColor().isStriped(); } }; /** * DrugPopulation */ mw.calculators.drugPopulations = {}; mw.calculators.addDrugPopulations = function( drugPopulationData ) { var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData ); for( var drugPopulationId in drugPopulations ) { mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ]; } }; mw.calculators.getDrugPopulation = function( drugPopulationId ) { if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) { return mw.calculators.drugPopulations[ drugPopulationId ]; } else { return null; } }; /** * Class DrugPopulation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugPopulation} * @constructor */ mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'abbreviation', 'variables' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); if( this.variables ) { for( var variableId in this.variables ) { if( !mw.calculators.getVariable( variableId ) ) { throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' ); } this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ? math.unit( this.variables[ variableId ].min ) : null; this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ? math.unit( this.variables[ variableId ].max ) : null; } } else { this.variables = {}; } }; mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); for( var variableId in this.variables ) { inputData.variables.required.push( variableId ); } return inputData; }; mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) { // A return value of -1 indicates the data did not match the population definition for( var variableId in this.variables ) { if( !dataValues.hasOwnProperty( variableId ) ) { return -1; } if( this.variables[ variableId ].min && !math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) { return -1; } if( this.variables[ variableId ].max && !math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) { return -1; } } // If the data matches the population definition, the score corresponds to the number of variables in the // population definition. This should roughly correspond to the specificity of the population. return Object.keys( this.variables ).length; }; mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() { return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; } /** * DrugIndication */ mw.calculators.drugIndications = {}; mw.calculators.addDrugIndications = function( drugIndicationData ) { var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData ); for( var drugIndicationId in drugIndications ) { mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ]; } }; mw.calculators.getDrugIndication = function( drugIndicationId ) { if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) { return mw.calculators.drugIndications[ drugIndicationId ]; } else { return null; } }; /** * Class DrugIndication * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugIndication} * @constructor */ mw.calculators.objectClasses.DrugIndication = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'abbreviation' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); }; mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugIndication.prototype.toString = function() { return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; }; /** * Drug */ mw.calculators.drugs = {}; mw.calculators.addDrugs = function( drugData ) { var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData ); for( var drugId in drugs ) { mw.calculators.drugs[ drugId ] = drugs[ drugId ]; } }; mw.calculators.addDrugDosages = function( drugId, drugDosageData ) { var drug = mw.calculators.getDrug( drugId ); if( !drug ) { throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' ); } drug.addDosages( drugDosageData ); var calculationId = 'drugDosage-' + drugId; var calculation = mw.calculators.getCalculation( calculationId ); if( !calculation ) { var calculationData = {}; calculationData[ calculationId ] = { calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate, drug: drugId, type: 'drug' }; mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' ); calculation = mw.calculators.getCalculation( calculationId ); } calculation.setDependencies(); }; mw.calculators.getDrug = function( drugId ) { if( mw.calculators.drugs.hasOwnProperty( drugId ) ) { return mw.calculators.drugs[ drugId ]; } else { return null; } }; /** * Class Drug * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.Drug} * @constructor */ mw.calculators.objectClasses.Drug = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'color' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); if( !this.color ) { this.color = DEFAULT_DRUG_COLOR; } var color = mw.calculators.getDrugColor( this.color ); if( !color ) { throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' ); } this.color = color; this.dosages = []; this.preparations = []; }; mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.Drug.prototype.addDosages = function( drugDosageData ) { var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', drugDosageData ); for( var dosageId in dosages ) { dosages[ dosageId ].id = this.dosages.length; this.dosages.push( dosages[ dosageId ] ); } }; mw.calculators.objectClasses.Drug.prototype.getIndications = function() { var indications = []; for( var iDosage in this.dosages ) { if( this.dosages[ iDosage ].indication ) { indications.push( this.dosages[ iDosage ].indication ); } } return indications.filter( mw.calculators.uniqueValues ); }; mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) { var populations = []; for( var iDosage in this.dosages ) { if( this.dosages[ iDosage ].population && ( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { populations.push( this.dosages[ iDosage ].population ); } } return populations.filter( mw.calculators.uniqueValues ); }; mw.calculators.objectClasses.Drug.prototype.getPreparations = function() { return this.preparations.filter( mw.calculators.uniqueValues ); }; /** * DrugPreparation */ mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) { if( !mw.calculators.getDrug( drugId ) ) { throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' ); } for( var drugPreparationId in drugPreparationData ) { drugPreparationData[ drugPreparationId ].drug = drugId; } var drugPreparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', drugPreparationData ); for( var drugPreparationId in drugPreparations ) { mw.calculators.drugs[ drugId ].preparations[ drugPreparationId ] = drugPreparations[ drugPreparationId ]; } }; /** * Class DrugPreparation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugPreparation} * @constructor */ mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) { var properties = { required: [ 'drug', 'id', 'concentration' ], optional: [ 'dilutionRequired', 'commonDilution' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); this.concentration = this.concentration.replace( 'mcg', 'ug' ); this.concentration = math.unit( this.concentration ); }; mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() { // The units of concentration will always be of the form "mass / volume" // The regular expression matches all text leading up to the volume units return this.concentration.formatUnits().replace( /.*\/\s?/, '' ); }; mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() { return mw.calculators.getValueString( this.concentration ); }; /** * Class DrugDosage * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosage} * @constructor */ mw.calculators.objectClasses.DrugDosage = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); var drugIndication = mw.calculators.getDrugIndication( this.indication ); if( !drugIndication ) { throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' ); } this.indication = drugIndication; this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION; var drugPopulation = mw.calculators.getDrugPopulation( this.population ); if( !drugPopulation ) { throw new Error( 'Invalid population "' + this.population + '" for drug dosage' ); } this.population = drugPopulation; this.route = this.route ? this.route : 'IV'; var drugDoseData = this.dose; this.dose = []; this.addDoses( drugDoseData ); }; mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) { // Each dosage can have one or more associated doses. Ensure this value is an array. if( !Array.isArray( drugDoseData ) ) { drugDoseData = [ drugDoseData ]; } var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData ); for( var doseId in doses ) { doses[ doseId ].id = this.dose.length; this.dose.push( doses[ doseId ] ); } }; mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); inputData = inputData.merge( this.population.getCalculationData() ); for( var iDose in this.dose ) { inputData = inputData.merge( this.dose[ iDose ].getCalculationData() ); } return inputData; }; mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() { return { required: [ 'dose', 'id', 'indication' ], optional: [ 'description', 'population', 'route' ] }; } /** * Class DrugDose * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDose} * @constructor */ mw.calculators.objectClasses.DrugDose = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); var mathProperties = this.getMathProperties(); for( var iMathProperty in mathProperties ) { var mathProperty = mathProperties[ iMathProperty ]; if( this[ mathProperty ] ) { // TODO consider making a UnitsBase.weight.fromString() this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' ); this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' ); this[ mathProperty ] = math.unit( this[ mathProperty ] ); } else { this[ mathProperty ] = null; } } if( this.weightCalculation ) { var weightCalculation = mw.calculators.getCalculation( this.weightCalculation ); if( !weightCalculation ) { throw new Error( 'Drug dose references weight calculation "' + this.weightCalculation + '" which is not defined' ); } this.weightCalculation = weightCalculation; } }; mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() { var calculationData = new mw.calculators.objectClasses.CalculationData(); var mathProperties = this.getMathProperties(); // Look at dose properties to identify any variable dependence (e.g. weight-dependence) for( var iMathProperty in mathProperties ) { var mathProperty = mathProperties[ iMathProperty ]; var dosePropertyValue = this[ mathProperty ]; // For now, this only supports weight dependence, unclear if it will need to be more generalizable in the future if( mw.calculators.isValueDependent( dosePropertyValue, 'weight' ) && calculationData.variables.optional.indexOf( 'weight' ) === -1 ) { calculationData.variables.optional.push( 'weight' ); } } if( this.weightCalculation ) { calculationData.calculations.optional.push( this.weightCalculation.id ); } return calculationData; }; mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() { return [ 'dose', 'min', 'max', 'absoluteMin', 'absoluteMax' ]; }; mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() { return { required: [ 'id' ], optional: [ 'absoluteMin', 'absoluteMax', 'dose', 'frequency', 'min', 'max', 'name', 'weightCalculation' ] }; }; /** * Class DrugDosageCalculation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosageCalculation} * @constructor */ mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); this.initialize(); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype ); mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) { var value = { population: null, preparation: data.preparation, dose: [] }; // Determine which dosage to use var populationScores = []; for( var iDosage in data.drug.dosages ) { var drugDosage = data.drug.dosages[ iDosage ]; // If the indication does not match, set the score to -1 var populationScore = ( drugDosage.indication.id === data.indication.id ) ? drugDosage.population.getCalculationDataScore( data ) : -1; populationScores.push( populationScore ); } var maxPopulationScore = Math.max.apply( null, populationScores ); if( maxPopulationScore < 0 ) { return value; } // If there is more than one dosage with the same score, take the first. // This allows the data editor to decide which is most important. var dosageId = populationScores.indexOf( maxPopulationScore ); var dosage = data.drug.dosages[ dosageId ]; value.population = dosage.population; // A dosage may contain multiple doses (e.g. induction and maintenance) for( var iDose in dosage.dose ) { var dose = dosage.dose[ iDose ]; var mathProperties = dose.getMathProperties(); // Initialize value properties for dose value.dose[ iDose ] = { massPerWeight: { decimals: 0 }, mass: { decimals: 0 }, name: dose.name, volume: { decimals: 0 }, weightCalculation: dose.weightCalculation ? dose.weightCalculation : null }; var weightValue = dose.weightCalculation ? dose.weightCalculation.value : data.weight; for( var iMathProperty in mathProperties ) { var mathProperty = mathProperties[ iMathProperty ]; var doseValue = dose[ mathProperty ]; if( doseValue ) { var doseValueDecimals = mw.calculators.getValueDecimals( doseValue ); if( mw.calculators.isValueDependent( doseValue, 'weight' ) ) { value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue; // Set the decimals based upon the specified dose value.dose[ iDose ].massPerWeight.decimals = math.max( doseValueDecimals, value.dose[ iDose ].massPerWeight.decimals ); // For whatever reason math.format will simplify the units, but math.formatUnits will not // as a hack, we recreate a new unit value with the correct formatting of the result value.dose[ iDose ].mass[ mathProperty ] = weightValue ? math.unit( math.multiply( doseValue, weightValue ).format() ) : null; // Mass should use one fewer decimals than massPerWeight (unless already 0) value.dose[ iDose ].mass.decimals = math.max( math.max( doseValueDecimals - 1, 0 ), value.dose[ iDose ].mass.decimals ); } else { value.dose[ iDose ].mass[ mathProperty ] = doseValue; // Set the decimals based upon the specified dose value.dose[ iDose ].mass.decimals = math.max( doseValueDecimals, value.dose[ iDose ].mass.decimals ); } if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) { // Same hack as above to get units to simplify correctly value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ); // value.dose[ iDose ].volume.decimals = 0; } } } } return value; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() { var $calculationContainer = $( '.' + this.getContainerClass() ); if( !$calculationContainer.length ) { return; } $calculationContainer.empty(); // Label column var labelAttributes = {}; var labelCss = {}; if( this.drug.color.isStriped() ) { labelCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + this.drug.color.getPrimaryColor(); } else { labelCss[ 'background-color'] = this.drug.color.getPrimaryColor(); } var $label = $( '<th>', labelAttributes ).css( labelCss ); $label.append( this.getLabelHtml() ); var $infoButton = null; if( this.hasInfo() ) { $infoButton = $( '<a>', { 'data-toggle': 'collapse', href: '#' + this.getContainerClass() + '-info', role: 'button', 'aria-expanded': 'false', 'aria-controls': this.getContainerClass() + '-info' } ) .append( $( '<i>', { class: 'far fa-question-circle' } ) ); $label .append( $( '<span>', { class: 'calculator-calculation-column-label-info' } ) .append( $infoButton ) ); } // Indication column var $indication = $( '<td>' ); var indications = this.drug.getIndications(); if( indications.length > 1 ) { $indication.append( mw.calculators.getVariable( this.getVariableIds().indication ).createInput({ hideLabel: true } ) ); } else { $indication.append( String( indications[ 0 ] ) ); } // Dosage column var $dosage = $( '<td>' ); var dash = '–'; var preparations = this.drug.getPreparations(); var $preparationSelect; if( preparations.length > 1 ) { $preparationSelect = mw.calculators.getVariable( this.getVariableIds().preparation ).createInput({ hideLabel: true, inline: true, inputClass: 'calculator-input-preparation' } ); } else { $preparationSelect = String( preparations[ 0 ] ); } if( this.value.population && this.value.population.id !== DEFAULT_DRUG_POPULATION ) { $dosage.append( String( this.value.population ) + '<br />' ); } for( var iDose in this.value.dose ) { var doseValue = this.value.dose[ iDose ]; if( doseValue.name ) { $dosage.append( doseValue.name + '<br />' ); } var massPerWeightHtml = ''; if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) { massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose, doseValue.massPerWeight.decimals ); } else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) && doseValue.massPerWeight.hasOwnProperty( 'max' ) ) { massPerWeightHtml += mw.calculators.getValueNumber( doseValue.massPerWeight.min, doseValue.massPerWeight.decimals ); massPerWeightHtml += dash; massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.max, doseValue.massPerWeight.decimals ); } if( massPerWeightHtml ) { if( doseValue.weightCalculation ) { massPerWeightHtml += ' (' + doseValue.weightCalculation.getLabelString() + ')'; } $dosage.append( massPerWeightHtml + '<br />' ); } var massHtml = ''; var massUnits = ''; if( doseValue.mass.hasOwnProperty( 'dose' ) ) { massHtml += mw.calculators.getValueString( doseValue.mass.dose, doseValue.mass.decimals ); massUnits = mw.calculators.getUnitsString( doseValue.mass.dose ); } else if( doseValue.mass.hasOwnProperty( 'min' ) && doseValue.mass.hasOwnProperty( 'max' ) ) { massHtml += mw.calculators.getValueNumber( doseValue.mass.min, doseValue.mass.decimals ); massHtml += dash; massHtml += mw.calculators.getValueString( doseValue.mass.max, doseValue.mass.decimals ); massUnits = mw.calculators.getUnitsString( doseValue.mass.min ); } if( massHtml ) { $dosage.append( massHtml + '<br />' ); } var volumeHtml = ''; if( this.value.preparation ) { // Get the volume units of the preparation var volumeUnits = this.value.preparation.getVolumeUnits(); if( !$.isEmptyObject( doseValue.mass ) && massUnits ) { // Extract any remaining additional dependent units (e.g. /min) var massRemainderUnits = massUnits.replace( /.*\/?/, '' ); if( massRemainderUnits ) { volumeUnits = volumeUnits + '/' + massRemainderUnits; } } if( doseValue.volume.hasOwnProperty( 'dose' ) ) { volumeHtml += mw.calculators.getValueString( doseValue.volume.dose.to( volumeUnits ), doseValue.volume.decimals ); } else if( doseValue.volume.hasOwnProperty( 'min' ) && doseValue.volume.hasOwnProperty( 'max' ) ) { volumeHtml += mw.calculators.getValueNumber( doseValue.volume.min.to( volumeUnits ), doseValue.volume.decimals ); volumeHtml += dash; volumeHtml += mw.calculators.getValueString( doseValue.volume.max.to( volumeUnits ), doseValue.volume.decimals ); } if( volumeHtml ) { $dosage.append( volumeHtml + ' of ' ); $dosage.append( $preparationSelect ); $dosage.append( '<br />' ); } } } $calculationContainer .append( $label, $indication, $dosage ); return; var calculation = this; $calculationContainer.each( function() { $( this ).empty(); if( calculation.hasInfo() ) { var infoHtml = ''; if( calculation.description ) { infoHtml += $( '<p>', { html: calculation.description } )[ 0 ].outerHTML; } if( calculation.formula ) { infoHtml += $( '<span>', { class: calculation.getContainerClass() + '-formula' } )[ 0 ].outerHTML; var api = new mw.Api(); api.parse( calculation.formula ).then( function( result ) { $( '.' + calculation.getContainerClass() + '-formula' ).html( result ); } ); } if( calculation.references.length ) { var $references = $( '<ol>' ); for( var iReference in calculation.references ) { $references.append( $( '<li>', { text: calculation.references[ iReference ] } ) ); } infoHtml += $references[ 0 ].outerHTML; } var infoContainerId = calculation.getContainerClass() + '-info'; var $infoContainer = $( '#' + infoContainerId ); if( $infoContainer.length ) { $infoContainer.empty(); } $infoContainer = $( '<tr>', { id: infoContainerId, class: 'collapse' } ) .append( $( '<td>', { colspan: 2 } ).append( infoHtml ) ); $( this ).after( $infoContainer ); } } ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); // Add variables created by this calculation var variableIds = this.getVariableIds(); for( var variableType in variableIds ) { inputData.variables.optional.push( variableIds[ variableType ] ); } var dataTypes = inputData.getDataTypes(); // Data is only actually required if it is required by every dosage for the drug. // Data marked as required by an individual dosage that does not appear in every // dosage will be converted to optional. var requiredInputData = new mw.calculators.objectClasses.CalculationData(); // Need a way to tell the first iteration of the loop to initialize the required variables to a value that // is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't // reinitialize). var initializeRequiredData = true; // Iterate through each dosage to determine variable dependency for( var iDosage in this.drug.dosages ) { var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData(); inputData = inputData.merge( dosageInputData ); for( var iDataType in dataTypes ) { var dataType = dataTypes[ iDataType ]; if( initializeRequiredData ) { requiredInputData[ dataType ].required = inputData[ dataType ].required; } else { // Data is only truly required if it is required by all dosage calculations, so use array intersection requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) { return dosageInputData[ dataType ].required.indexOf( index ) !== -1; } ); } } initializeRequiredData = false; } for( var iDataType in dataTypes ) { var dataType = dataTypes[ iDataType ]; // Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear // in requiredInputData). inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) { return requiredInputData[ dataType ].required.indexOf( index ) === -1; } ) ).filter( mw.calculators.uniqueValues ); inputData[ dataType ].required = requiredInputData[ dataType ].required; } return inputData; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() { var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this ); data.drug = this.drug; data.indication = data[ this.getVariablePrefix() + 'indication' ] ? mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).value ) : null; delete data[ this.getVariablePrefix() + 'indication' ]; data.preparation = data[ this.getVariablePrefix() + 'preparation' ] ? this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).value ] : null; delete data[ this.getVariablePrefix() + 'preparation' ]; return data; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getLabelHtml = function() { var labelHtml = this.drug.name; var $label = $( '<a>', { href: mw.util.getUrl( this.drug.name ), text: labelHtml } ); var highlightColor = this.drug.color.getHighlightColor(); if( highlightColor ) { $label.css( 'background-color', highlightColor ); } labelHtml = $label[ 0 ].outerHTML; return labelHtml; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() { var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties(); return this.mergeProperties( inheritedProperties, { required: [ 'drug' ], optional: [] } ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() { return { indication: this.getVariablePrefix() + 'indication', preparation: this.getVariablePrefix() + 'preparation' }; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() { return this.drug.id + '-'; } mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() { mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this ); var drug = mw.calculators.getDrug( this.drug ); if( !drug ) { throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' ); } this.drug = drug; var variableIds = this.getVariableIds(); // Create variables for indication, population?, preparation select boxes? Here or m.c.addDosages() or elsewhere? // Will have to add them to getCalculationData too. var drugVariables = {}; var indications = this.drug.getIndications(); var indicationOptions = {}; for( var iIndication in indications ) { var indication = indications[ iIndication ]; indicationOptions[ indication.id ] = String( indication ); } drugVariables[ variableIds.indication ] = { name: 'Indication', type: 'string', defaultValue: indications.length ? indications[ 0 ].id : null, options: indicationOptions }; var preparations = this.drug.getPreparations(); var preparationOptions = {}; for( var iPreparation in preparations ) { var preparation = preparations[ iPreparation ]; preparationOptions[ preparation.id ] = String( preparation ); } drugVariables[ variableIds.preparation ] = { name: 'Preparation', type: 'string', defaultValue: preparations.length ? preparations[ 0 ].id : null, options: preparationOptions }; mw.calculators.addVariables( drugVariables ); }; /** * Class DrugDosageCalculator * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosageCalculator} * @constructor */ mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); }; mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype ); mw.calculators.objectClasses.DrugDosageCalculator.prototype.doRender = function() { var $calculatorContainer = $( '.' + this.getContainerClass() ); if( !$calculatorContainer.length ) { return; } $calculatorContainer.addClass( this.getCalculatorClass() ); $calculatorContainer.empty(); $calculatorContainer.append( $( '<h4>', { text: this.name } ) ); var $calculationsContainer = $( '<table>', { class: 'wikitable' } ).append( '<tbody>' ); $calculatorContainer.append( $calculationsContainer ); $calculationsContainer .append( $( '<tr>' ) .append( $( '<th>', { class: this.getCalculatorClass() + '-drug' } ).text( 'Drug' ), $( '<th>', { class: this.getCalculatorClass() + '-indication' } ).text( 'Indication' ), $( '<th>', { class: this.getCalculatorClass() + '-dose' } ).text( 'Dose' ) ) ); for( var iCalculationId in this.calculations ) { var calculation = mw.calculators.getCalculation( this.calculations[ iCalculationId ] ); var calculationContainerClass = calculation.getContainerClass(); var $calculationContainer = $( '<tr>', { class: calculationContainerClass } ); $calculationsContainer.append( $calculationContainer ); calculation.render(); } }; mw.calculators.objectClasses.DrugDosageCalculator.prototype.getCalculatorClass = function() { return 'calculator-DrugDosageCalculator'; }; mw.calculators.objectClasses.DrugDosageCalculator.prototype.getProperties = function() { var inheritedProperties = mw.calculators.objectClasses.AbstractCalculator.prototype.getProperties(); return this.mergeProperties( inheritedProperties, { required: [], optional: [] } ); }; }() );