Difference between revisions of "MediaWiki:Gadget-calculator-drugs-core.js"
From WikiAnesthesia
Chris Rishel (talk | contribs) |
Chris Rishel (talk | contribs) |
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*/ | */ | ||
( function() { | ( function() { | ||
var DEFAULT_DRUG_COLOR = 'default'; | |||
var DEFAULT_DRUG_POPULATION = 'general'; | |||
var DEFAULT_DRUG_ROUTE = 'iv'; | |||
mw.calculators.isValueDependent = function( value, variableId ) { | |||
// This may need generalized to support other variables in the future | |||
if( variableId === 'weight' ) { | |||
return value && value.formatUnits().match( /\/[\s(]*?kg/ ); | |||
} else { | |||
throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' ); | |||
} | |||
}; | |||
/** | /** | ||
* | * Define units | ||
*/ | */ | ||
mw.calculators. | mw.calculators.addUnitsBases( { | ||
concentration: { | |||
toString: function( units ) { | |||
units = units.replace( ' pct', '%' ); | |||
units = units.replace( 'ug', 'mcg' ); | |||
return units; | |||
} | |||
}, | }, | ||
mass: { | |||
toString: function( units ) { | |||
units = units.replace( 'ug', 'mcg' ); | |||
return units; | |||
} | |||
} | |||
} ); | |||
mw.calculators.addUnits( { | |||
mcg: { | |||
baseName: 'mass', | |||
definition: '1 ug' | |||
}, | }, | ||
pct: { | |||
baseName: 'concentration', | |||
definition: '10 mg/mL' | |||
}, | }, | ||
units: { | |||
baseName: 'mass_abstract', | |||
aliases: [ | |||
'unit' | |||
] | |||
}, | }, | ||
vial: { | |||
baseName: 'volume_abstract' | |||
} | } | ||
} ); | } ); | ||
Line 79: | Line 60: | ||
/** | /** | ||
* | * DrugColor | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugColors = {}; | ||
mw.calculators.addDrugColors = function( drugColorData ) { | |||
var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData ); | |||
for( var drugColorId in drugColors ) { | |||
mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ]; | |||
} | } | ||
} | }; | ||
mw.calculators.getDrugColor = function( drugColorId ) { | |||
if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) { | |||
return mw.calculators.drugColors[ drugColorId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugColor | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugColor} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugColor = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id' | |||
], | |||
optional: [ | |||
'parentColor', | |||
'primaryColor', | |||
'highlightColor', | |||
}, | 'striped' | ||
] | |||
}; | |||
} | mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | ||
this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() { | |||
if( !this.parentColor ) { | |||
return null; | |||
} | |||
var parentDrugColor = mw.calculators.getDrugColor( this.parentColor ); | |||
if( !parentDrugColor ) { | |||
throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' ); | |||
} | } | ||
return parentDrugColor; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() { | |||
if( this.highlightColor ) { | |||
return this.highlightColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getHighlightColor(); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() { | |||
if( this.primaryColor ) { | |||
return this.primaryColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getPrimaryColor(); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() { | |||
if( this.striped !== null ) { | |||
return this.striped; | |||
mw.calculators. | } else if( this.parentColor ) { | ||
return this.getParentDrugColor().isStriped(); | |||
} | |||
} | } | ||
} | }; | ||
/** | /** | ||
* | * DrugPopulation | ||
*/ | */ | ||
mw.calculators.drugPopulations = {}; | |||
mw.calculators.addDrugPopulations = function( drugPopulationData ) { | |||
var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData ); | |||
for( var drugPopulationId in drugPopulations ) { | |||
mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ]; | |||
} | |||
}; | |||
mw.calculators.getDrugPopulation = function( drugPopulationId ) { | |||
if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) { | |||
return mw.calculators.drugPopulations[ drugPopulationId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugPopulation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPopulation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
{ | 'abbreviation', | ||
'variables' | |||
] | |||
}; | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
if( this.variables ) { | |||
for( var variableId in this.variables ) { | |||
if( !mw.calculators.getVariable( variableId ) ) { | |||
throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' ); | |||
} | } | ||
] | |||
this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ? | |||
math.unit( this.variables[ variableId ].min ) : null; | |||
this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ? | |||
math.unit( this.variables[ variableId ].max ) : null; | |||
} | |||
} else { | |||
this.variables = {}; | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
for( var variableId in this.variables ) { | |||
inputData.variables.required.push( variableId ); | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) { | |||
// A return value of -1 indicates the data did not match the population definition | |||
for( var variableId in this.variables ) { | |||
if( !dataValues.hasOwnProperty( variableId ) ) { | |||
return -1; | |||
} | |||
if( this.variables[ variableId ].min && | |||
( !dataValues[ variableId ] || | |||
!math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) ) { | |||
return -1; | |||
} | |||
if( this.variables[ variableId ].max && | |||
( !dataValues[ variableId ] || | |||
!math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) ) { | |||
return -1; | |||
} | |||
} | } | ||
} ); | |||
// If the data matches the population definition, the score corresponds to the number of variables in the | |||
// population definition. This should roughly correspond to the specificity of the population. | |||
return Object.keys( this.variables ).length; | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * DrugRoute | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugRoutes = {}; | ||
mw.calculators.addDrugRoutes = function( drugRouteData ) { | |||
var drugRoutes = mw.calculators.createCalculatorObjects( 'DrugRoute', drugRouteData ); | |||
for( var drugRouteId in drugRoutes ) { | |||
mw.calculators.drugRoutes[ drugRouteId ] = drugRoutes[ drugRouteId ]; | |||
] | |||
} | } | ||
}; | |||
mw.calculators.getDrugRoute = function( drugRouteId ) { | |||
if( mw.calculators.drugRoutes.hasOwnProperty( drugRouteId ) ) { | |||
return mw.calculators.drugRoutes[ drugRouteId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugRoute | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugRoute} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugRoute = function( propertyValues ) { | ||
{ | var properties = { | ||
required: [ | |||
'id', | |||
'name' | |||
' | |||
], | ], | ||
optional: [ | |||
'abbreviation', | |||
'default' | |||
] | ] | ||
} | }; | ||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugRoute.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugRoute.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * DrugIndication | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugIndications = {}; | ||
mw.calculators.addDrugIndications = function( drugIndicationData ) { | |||
var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData ); | |||
for( var drugIndicationId in drugIndications ) { | |||
mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ]; | |||
] | |||
} | } | ||
}; | |||
mw.calculators.getDrugIndication = function( drugIndicationId ) { | |||
if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) { | |||
return mw.calculators.drugIndications[ drugIndicationId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugIndication | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugIndication} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugIndication = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
'abbreviation', | |||
'default' | |||
] | ] | ||
} | }; | ||
} ); | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugIndication.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * Drug | ||
*/ | */ | ||
mw.calculators.addDrugs( { | mw.calculators.drugs = {}; | ||
mw.calculators.addDrugs = function( drugData ) { | |||
var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData ); | |||
{ | for( var drugId in drugs ) { | ||
mw.calculators.drugs[ drugId ] = drugs[ drugId ]; | |||
var drugDosageCalculationId = mw.calculators.getDrugDosageCalculationId( drugId ); | |||
var drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); | |||
} | if( !drugDosageCalculation ) { | ||
var calculationData = {}; | |||
calculationData[ drugDosageCalculationId ] = { | |||
calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate, | |||
drug: drugId, | |||
type: 'drug' | |||
}; | |||
] | |||
mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' ); | |||
drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); | |||
} | |||
drugDosageCalculation.setDependencies(); | |||
} | |||
}; | |||
mw.calculators.addDrugDosages = function( drugId, drugDosageData ) { | |||
var drug = mw.calculators.getDrug( drugId ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' ); | |||
} | |||
drug.addDosages( drugDosageData ); | |||
// Update calculation dependencies | |||
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); | |||
drugDosageCalculation.updateVariables(); | |||
drugDosageCalculation.setDependencies(); | |||
}; | |||
mw.calculators.getDrug = function( drugId ) { | |||
if( mw.calculators.drugs.hasOwnProperty( drugId ) ) { | |||
return mw.calculators.drugs[ drugId ]; | |||
} else { | |||
return null; | |||
} | } | ||
} | }; | ||
/** | /** | ||
* | * Class Drug | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.Drug} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.Drug = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
dosages: [ | if( !this.color ) { | ||
this.color = DEFAULT_DRUG_COLOR; | |||
} | |||
var color = mw.calculators.getDrugColor( this.color ); | |||
if( !color ) { | |||
throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' ); | |||
} | |||
this.color = color; | |||
if( this.preparations ) { | |||
var preparationData = this.preparations; | |||
this.preparations = []; | |||
this.addPreparations( preparationData ); | |||
} else { | |||
this.preparations = []; | |||
} | |||
if( this.dosages ) { | |||
var dosageData = this.dosages; | |||
this.dosages = []; | |||
this.addDosages( dosageData ); | |||
} else { | |||
this.dosages = []; | |||
} | |||
this.references = this.references ? this.references : []; | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.Drug.prototype.addDosages = function( dosageData ) { | |||
var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', dosageData ); | |||
for( var dosageId in dosages ) { | |||
dosages[ dosageId ].id = this.dosages.length; | |||
this.dosages.push( dosages[ dosageId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.addPreparations = function( preparationData ) { | |||
var preparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', preparationData ); | |||
for( var preparationId in preparations ) { | |||
preparations[ preparationId ].id = this.preparations.length; | |||
this.preparations.push( preparations[ preparationId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getIndications = function() { | |||
var indications = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].indication ) { | |||
indications.push( this.dosages[ iDosage ].indication ); | |||
} | |||
} | |||
return indications.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) { | |||
var populations = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].population && | |||
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { | |||
populations.push( this.dosages[ iDosage ].population ); | |||
} | |||
} | |||
return populations.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getRoutes = function( indicationId ) { | |||
var routes = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].route && | |||
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { | |||
routes.push( this.dosages[ iDosage ].route ); | |||
} | |||
} | |||
return routes.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPreparations = function( excludeDilutionRequired ) { | |||
var preparations = this.preparations.filter( mw.calculators.uniqueValues ); | |||
if( excludeDilutionRequired ) { | |||
for( var iPreparation in preparations ) { | |||
if( preparations[ iPreparation ].dilutionRequired ) { | |||
delete preparations[ iPreparation ]; | |||
} | } | ||
} | |||
} | |||
return preparations; | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
'color', | |||
'description', | |||
'dosages', | |||
'preparations', | |||
'references' | |||
] | ] | ||
} | }; | ||
} | }; | ||
/** | /** | ||
* | * DrugPreparation | ||
*/ | */ | ||
mw.calculators. | mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) { | ||
var drug = mw.calculators.getDrug( drugId ); | |||
if( !drug ) { | |||
throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' ); | |||
} | } | ||
} | |||
drug.addPreparations( drugPreparationData ); | |||
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); | |||
drugDosageCalculation.recalculate(); | |||
}; | |||
/** | /** | ||
* | * Class DrugPreparation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPreparation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) { | ||
{ | var properties = { | ||
required: [ | |||
'id', | |||
'concentration' | |||
], | ], | ||
optional: [ | |||
'default', | |||
'dilutionRequired', | |||
'commonDilution' | |||
] | ] | ||
} | }; | ||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
this.concentration = this.concentration.replace( 'mcg', 'ug' ); | |||
this.concentration = math.unit( this.concentration ); | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() { | |||
// The units of concentration will always be of the form "mass / volume" | |||
// The regular expression matches all text leading up to the volume units | |||
return mw.calculators.getUnitsByBase( this.concentration ).volume; | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() { | |||
return mw.calculators.getValueString( this.concentration ); | |||
}; | |||
/** | /** | ||
* | * Class DrugDosage | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosage} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosage = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
var drugIndication = mw.calculators.getDrugIndication( this.indication ); | |||
if( !drugIndication ) { | |||
throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' ); | |||
} | |||
this.indication = drugIndication; | |||
this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION; | |||
var drugPopulation = mw.calculators.getDrugPopulation( this.population ); | |||
if( !drugPopulation ) { | |||
throw new Error( 'Invalid population "' + this.population + '" for drug dosage' ); | |||
} | |||
this.population = drugPopulation; | |||
this.references = this.references ? this.references : []; | |||
this.route = this.route ? this.route : DEFAULT_DRUG_ROUTE; | |||
var drugRoute = mw.calculators.getDrugRoute( this.route ); | |||
if( !drugRoute ) { | |||
throw new Error( 'Invalid route "' + this.route + '" for drug dosage' ); | |||
} | |||
this.route = drugRoute; | |||
// Add the dose objects to the drug | |||
var drugDoseData = this.dose; | |||
this.dose = []; | |||
this.addDoses( drugDoseData ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) { | |||
// Each dosage can have one or more associated doses. Ensure this value is an array. | |||
if( !Array.isArray( drugDoseData ) ) { | |||
drugDoseData = [ drugDoseData ]; | |||
} | |||
var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData ); | |||
for( var doseId in doses ) { | |||
doses[ doseId ].id = this.dose.length; | |||
this.dose.push( doses[ doseId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
inputData = inputData.merge( this.population.getCalculationData() ); | |||
for( var iDose in this.dose ) { | |||
inputData = inputData.merge( this.dose[ iDose ].getCalculationData() ); | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'dose', | |||
'id', | |||
'indication' | |||
], | ], | ||
optional: [ | |||
'description', | |||
'population', | |||
'route', | |||
'references' | |||
] | ] | ||
} | }; | ||
} ); | }; | ||
mw.calculators.objectClasses.DrugDosage.prototype.hasInfo = function() { | |||
return this.description; | |||
}; | |||
/** | /** | ||
* | * Class DrugDose | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDose} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDose = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
if( this.weightCalculation ) { | |||
var weightCalculationIds = this.weightCalculation; | |||
// weightCalculation property will contain references to the actual objects, so reinitialize | |||
this.weightCalculation = []; | |||
if( !Array.isArray( weightCalculationIds ) ) { | |||
weightCalculationIds = [ weightCalculationIds ]; | |||
} | |||
for( var iWeightCalculation in weightCalculationIds ) { | |||
var weightCalculationId = weightCalculationIds[ iWeightCalculation ]; | |||
var weightCalculation = mw.calculators.getCalculation( weightCalculationId ); | |||
if( !weightCalculation ) { | |||
throw new Error( 'Drug dose references weight calculation "' + weightCalculationId + '" which is not defined' ); | |||
} | } | ||
] | |||
this.weightCalculation.push( weightCalculation ); | |||
} | |||
} else { | |||
this.weightCalculation = []; | |||
} | |||
var mathProperties = this.getMathProperties(); | |||
var isWeightDependent = false; | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
if( this[ mathProperty ] ) { | |||
// TODO consider making a UnitsBase.weight.fromString() | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' ); | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' ); | |||
this[ mathProperty ] = math.unit( this[ mathProperty ] ); | |||
if( mw.calculators.isValueDependent( this[ mathProperty ], 'weight' ) ) { | |||
isWeightDependent = true; | |||
} | } | ||
] | } else { | ||
this[ mathProperty ] = null; | |||
} | |||
} | |||
if( isWeightDependent ) { | |||
// Default is tbw | |||
this.weightCalculation.push( mw.calculators.getCalculation( 'tbw' ) ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugDose.prototype.getAdministration = function() { | |||
var administration = ''; | |||
if( this.frequency ) { | |||
administration += administration ? ' ' : ''; | |||
administration += this.frequency; | |||
} | |||
if( this.duration ) { | |||
administration += administration ? ' ' : ''; | |||
administration += 'over ' + this.duration; | |||
} | |||
return administration; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() { | |||
var calculationData = new mw.calculators.objectClasses.CalculationData(); | |||
for( var iWeightCalculation in this.weightCalculation ) { | |||
calculationData.calculations.optional.push( this.weightCalculation[ iWeightCalculation ].id ); | |||
} | } | ||
return calculationData; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() { | |||
return [ | |||
'dose', | |||
'min', | |||
'max', | |||
'absoluteMin', | |||
'absoluteMax' | |||
]; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'id' | |||
], | ], | ||
optional: [ | |||
'absoluteMax', | |||
'absoluteMin', | |||
'dose', | |||
'duration', | |||
'frequency', | |||
'min', | |||
'max', | |||
'name', | |||
'weightCalculation' | |||
] | ] | ||
} | }; | ||
} | }; | ||
mw.calculators.getDrugDosageCalculationId = function( drugId ) { | |||
return 'drugDosages-' + drugId; | |||
}; | |||
/** | /** | ||
* | * Class DrugDosageCalculation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosageCalculation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
this.initialize(); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype ); | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) { | |||
var value = { | |||
message: null, | |||
] | population: null, | ||
dose | preparation: data.preparation, | ||
dose: [] | |||
}; | |||
this.activeDosageId = null; | |||
if( !data.drug.dosages.length ) { | |||
value.message = 'No dose data'; | |||
return value; | |||
} | |||
// Determine which dosage to use | |||
var populationScores = []; | |||
for( var iDosage in data.drug.dosages ) { | |||
var drugDosage = data.drug.dosages[ iDosage ]; | |||
// If the indication and route do not match, set the score to -1 | |||
var populationScore = | |||
drugDosage.indication.id === data.indication.id && drugDosage.route.id === data.route.id ? | |||
drugDosage.population.getCalculationDataScore( data ) : -1; | |||
populationScores.push( populationScore ); | |||
} | |||
var maxPopulationScore = Math.max.apply( null, populationScores ); | |||
if( maxPopulationScore < 0 ) { | |||
value.message = 'No dose data for indication "' + String( data.indication ) + '" and route "' + String( data.route ) + '"'; | |||
return value; | |||
} | |||
// If there is more than one dosage with the same score, take the first. | |||
// This allows the data editor to decide which is most important. | |||
this.activeDosageId = populationScores.indexOf( maxPopulationScore ); | |||
var dosage = data.drug.dosages[ this.activeDosageId ]; | |||
// A dosage may contain multiple doses (e.g. induction and maintenance) | |||
for( var iDose in dosage.dose ) { | |||
var dose = dosage.dose[ iDose ]; | |||
var mathProperties = dose.getMathProperties(); | |||
var weightCalculation = null; | |||
var weightValue = null; | |||
// data.weightCalculation should be in order of preference, so take the first non-null value | |||
for( var iWeightCalculation in dose.weightCalculation ) { | |||
if( dose.weightCalculation[ iWeightCalculation ].value !== null ) { | |||
weightCalculation = dose.weightCalculation[ iWeightCalculation ]; | |||
weightValue = dose.weightCalculation[ iWeightCalculation ].value; | |||
break; | |||
} | |||
} | |||
// Initialize value properties for dose | |||
value.dose[ iDose ] = { | |||
massPerWeight: {}, | |||
mass: {}, | |||
volume: {}, | |||
weightCalculation: weightCalculation ? weightCalculation : null | |||
}; | |||
var massUnits; | |||
var volumeUnits; | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
var doseValue = dose[ mathProperty ]; | |||
if( doseValue ) { | |||
var doseUnitsByBase = mw.calculators.getUnitsByBase( doseValue ); | |||
if( doseUnitsByBase.hasOwnProperty( 'weight' ) ) { | |||
value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue; | |||
if( weightValue ) { | |||
massUnits = doseUnitsByBase.mass; | |||
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { | |||
massUnits += '/' + doseUnitsByBase.time; | |||
} | |||
// For whatever reason math.format will simplify the units, but math.formatUnits will not | |||
// as a hack, we recreate a new unit value with the correct formatting of the result | |||
value.dose[ iDose ].mass[ mathProperty ] = math.unit( math.multiply( doseValue, weightValue ).format() ).to( massUnits ); | |||
} | } | ||
} else { | |||
value.dose[ iDose ].mass[ mathProperty ] = doseValue; | |||
} | |||
if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) { | |||
// Need a special case for pct | |||
if( data.preparation.concentration.formatUnits() === 'pct' ) { | |||
volumeUnits = 'mL'; | |||
} else { | |||
var preparationUnitsByBase = mw.calculators.getUnitsByBase( data.preparation.concentration ); | |||
volumeUnits = preparationUnitsByBase.volume; | |||
} | |||
} | } | ||
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { | |||
volumeUnits += '/' + doseUnitsByBase.time; | |||
} | } | ||
// Same hack as above to get units to simplify correctly | |||
value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ).to( volumeUnits ); | |||
} | } | ||
} | } | ||
} | |||
if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMin' ) ) { | |||
if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.max ) ) { | |||
// Both min and max are larger than the absolute max dose, so just convert to single dose. | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; | |||
delete value.dose[ iDose ].mass.min; | |||
delete value.dose[ iDose ].mass.max; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; | |||
delete value.dose[ iDose ].volume.min; | |||
delete value.dose[ iDose ].volume.max; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.min ) ) { | |||
value.dose[ iDose ].mass.min = value.dose[ iDose ].mass.absoluteMin; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.min = value.dose[ iDose ].volume.absoluteMin; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.dose ) ) { | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; | |||
} | } | ||
} | } | ||
} | |||
{ | if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMax' ) ) { | ||
if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.min ) ) { | |||
// Both min and max are larger than the absolute max dose, so just convert to single dose. | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; | |||
delete value.dose[ iDose ].mass.min; | |||
delete value.dose[ iDose ].mass.max; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; | |||
delete value.dose[ iDose ].volume.min; | |||
delete value.dose[ iDose ].volume.max; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.max ) ) { | |||
value.dose[ iDose ].mass.max = value.dose[ iDose ].mass.absoluteMax; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
value.dose[ iDose ].volume.max = value.dose[ iDose ].volume.absoluteMax; | |||
} | } | ||
} | } else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.dose ) ) { | ||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
dose | value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; | ||
} | } | ||
} | } | ||
} | |||
} | |||
return value; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() { | |||
var $calculationContainer = $( '.' + this.getContainerId() ); | |||
if( !$calculationContainer.length ) { | |||
return; | |||
} | } | ||
// Add all required classes | |||
$calculationContainer.addClass( 'border ' + this.getContainerClasses() ); | |||
// Add search phrases | |||
$calculationContainer.attr( 'data-search', this.getSearchString() ); | |||
// Store this object in a local variable since .each() will reassign this to the DOM object of each | |||
// calculation container. | |||
var calculation = this; | |||
var calculationCount = 0; | |||
// Eventually may implement different rendering, so we should regenerate | |||
// all elements with each iteration of the loop. | |||
// I.e. might show result in table and inline in 2 different places of article. | |||
$calculationContainer.each( function() { | |||
// Initalize the variables for all the elements of the calculation. These need to be in order of placement | |||
// in the calculation container | |||
var elementTypes = [ | |||
'title', | |||
'dosage', | |||
'info' | |||
]; | |||
var elements = {}; | |||
for( var iElementType in elementTypes ) { | |||
var elementType = elementTypes[ iElementType ]; | |||
// If an input contained by $container has user input focus, $container will not rerender (would be | |||
// annoying behavior to the user). However, if it contains subelements which should try to rerender, | |||
// add those elements to the contains property. | |||
elements[ elementType ] = { | |||
$container: null, | |||
contains: [], | |||
id: calculation.getContainerId() + '-' + elementType | |||
}; | |||
if( calculationCount ) { | |||
elements[ elementType ].id += '-' + calculationCount; | |||
} | } | ||
} | |||
{ | // Create title element and append to container | ||
elements.title.$container = $( '<div>', { | |||
id: elements.title.id, | |||
class: 'col-12 border-bottom ' + calculation.getElementClasses( 'title' ) | |||
} ); | |||
elements.title.$container.append( calculation.getTitleHtml() ); | |||
if( calculation.hasInfo() ) { | |||
// Id of the info container should already be set by getInfo() | |||
elements.info.$container = calculation.getInfo(); | |||
} | |||
// Create the dosage element | |||
elements.dosage.$container = $( '<div>', { | |||
id: elements.dosage.id, | |||
class: 'row no-gutters ' + calculation.getElementClasses( 'dosage' ) | |||
} ); | |||
// Dose column | |||
var $dose = $( '<div>', { | |||
id: calculation.getContainerId() + '-dose', | |||
class: 'col-7 ' + calculation.getElementClasses( 'dose' ) | |||
} ); | |||
var dash = '-'; | |||
// The options column should only show the preparation if there is a calculated volume | |||
var hasVolume; | |||
if( !calculation.value || calculation.activeDosageId === null ) { | |||
if( calculation.value && calculation.value.hasOwnProperty( 'message' ) ) { | |||
$dose.append( $( '<i>' ).append( calculation.value.message ) ); | |||
} | } | ||
} else { | |||
var dosage = calculation.drug.dosages[ calculation.activeDosageId ]; | |||
if( dosage.population && dosage.population.id !== DEFAULT_DRUG_POPULATION ) { | |||
var $dosePopulation = $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-info' ) | |||
} ); | |||
$dosePopulation | |||
.append( $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-info-population' ) | |||
} ).append( String( dosage.population ) + ' dosing' ) ); | |||
$dose.append( $dosePopulation ); | |||
} | } | ||
var $doseData = $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-data' ) | |||
} ); | |||
// This will iterate through the calculated doses. iDose should exactly correspond to doses within dosage | |||
// to allow referencing other properties of the dose. | |||
for( var iDose in calculation.value.dose ) { | |||
var dose = dosage.dose[ iDose ]; | |||
var doseValue = calculation.value.dose[ iDose ]; | |||
if( dose.name ) { | |||
$doseData.append( dose.name + '<br />' ); | |||
} | } | ||
var $doseList = $( '<ul>' ); | |||
var administration = dose.getAdministration(); | |||
dose | var administrationDisplayed = false; | ||
min | |||
max | var massPerWeightHtml = ''; | ||
if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) { | |||
massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose ); | |||
} else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) && | |||
doseValue.massPerWeight.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var massPerWeightMinValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.min ) ); | |||
var massPerWeightMaxValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.max ) ); | |||
if( massPerWeightMinValue.formatUnits() !== massPerWeightMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMinValue ); | |||
} else { | |||
massPerWeightHtml += mw.calculators.getValueNumber( massPerWeightMinValue ); | |||
} | |||
massPerWeightHtml += dash; | |||
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMaxValue ); | |||
} | } | ||
if( massPerWeightHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
massPerWeightHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
dose | } | ||
var massPerWeightNotesHtml = ''; | |||
if( doseValue.mass.hasOwnProperty( 'absoluteMin' ) ) { | |||
massPerWeightNotesHtml += 'Min: ' + mw.calculators.getValueString( doseValue.mass.absoluteMin ); | |||
} else if( doseValue.mass.hasOwnProperty( 'absoluteMax' ) ) { | |||
massPerWeightNotesHtml += 'Max: ' + mw.calculators.getValueString( doseValue.mass.absoluteMax ); | |||
} | |||
if( dose.weightCalculation && dose.weightCalculation[ 0 ].id !== 'tbw' ) { | |||
if( massPerWeightNotesHtml ) { | |||
massPerWeightNotesHtml += ', '; | |||
} | |||
massPerWeightNotesHtml += dose.weightCalculation[ 0 ].getTitleString(); | |||
} | |||
if( massPerWeightNotesHtml ) { | |||
massPerWeightHtml += ' (' + massPerWeightNotesHtml + ')'; | |||
} | |||
massPerWeightHtml = $( '<li>' ).append( massPerWeightHtml ); | |||
$doseList.append( massPerWeightHtml ); | |||
} | } | ||
var massHtml = ''; | |||
if( doseValue.mass.hasOwnProperty( 'dose' ) ) { | |||
massHtml += mw.calculators.getValueString( doseValue.mass.dose ); | |||
max | } else if( doseValue.mass.hasOwnProperty( 'min' ) && | ||
doseValue.mass.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var massMinValue = math.unit( mw.calculators.getValueString( doseValue.mass.min ) ); | |||
var massMaxValue = math.unit( mw.calculators.getValueString( doseValue.mass.max ) ); | |||
if( massMinValue.formatUnits() !== massMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
massHtml += mw.calculators.getValueString( massMinValue ); | |||
} else { | |||
massHtml += mw.calculators.getValueNumber( massMinValue ); | |||
} | |||
massHtml += dash; | |||
massHtml += mw.calculators.getValueString( massMaxValue ); | |||
} | } | ||
if( massHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
massHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
} | |||
if( dose.weightCalculation.length && doseValue.weightCalculation.id !== dose.weightCalculation[ 0 ].id ) { | |||
var weightCalculationLabel = doseValue.weightCalculation.getTitleString(); | |||
var $weightCalculationInfoIcon = $( '<i>', { | |||
class: 'far fa-question-circle', | |||
'data-toggle': 'popover', | |||
'data-trigger': 'focus', | |||
'data-content': String( doseValue.weightCalculation ) + | |||
' is being used because data is missing for ' + | |||
String( dose.weightCalculation[ 0 ] ) + ': ' + dose.weightCalculation[ 0 ].message | |||
} ); | |||
massHtml += ' (' + weightCalculationLabel + ' ' + $weightCalculationInfoIcon[ 0 ].outerHTML + ')'; | |||
} | } | ||
massHtml = $( '<li>' ).append( massHtml ); | |||
$doseList.append( massHtml ); | |||
} | |||
var volumeHtml = ''; | |||
if( doseValue.volume.hasOwnProperty( 'dose' ) ) { | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.dose ); | |||
} else if( doseValue.volume.hasOwnProperty( 'min' ) && | |||
doseValue.volume.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var volumeMinValue = math.unit( mw.calculators.getValueString( doseValue.volume.min ) ); | |||
var volumeMaxValue = math.unit( mw.calculators.getValueString( doseValue.volume.max ) ); | |||
if( volumeMinValue.formatUnits() !== volumeMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
volumeHtml += mw.calculators.getValueString( volumeMinValue ); | |||
} else { | |||
volumeHtml += mw.calculators.getValueNumber( volumeMinValue ); | |||
} | |||
} | } | ||
volumeHtml += dash; | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.max ); | |||
} | |||
if( volumeHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
volumeHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
} | } | ||
volumeHtml = $( '<li>' ).append( volumeHtml ); | |||
$doseList.append( volumeHtml ); | |||
hasVolume = true; | |||
} | } | ||
$doseData.append( $doseList ); | |||
} | } | ||
$dose.append( $doseData ); | |||
{ | |||
if( calculation.hasInfo() ) { | |||
$dose.append( calculation.getInfoButton( calculationCount ) ); | |||
} | } | ||
} | |||
// Options column | |||
var $options = $( '<div>', { | |||
id: calculation.getContainerId() + '-options', | |||
class: 'col-5 ' + calculation.getElementClasses( 'options' ) | |||
} ); | |||
var optionsRowClass = 'row no-gutters align-items-center'; | |||
if( !mw.calculators.isMobile() ) { | |||
optionsRowClass += ' mb-2'; | |||
} | |||
var optionLabelClass = mw.calculators.isMobile() ? 'col-4' : 'col-3'; | |||
var optionValueClass = mw.calculators.isMobile() ? 'col-8' : 'col-9'; | |||
var indications = calculation.drug.getIndications(); | |||
if( indications.length ) { | |||
var indicationVariable = mw.calculators.getVariable( calculation.getVariableIds().indication ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: indicationVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( indicationVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | |||
var routes = calculation.drug.getRoutes(); | |||
if( routes.length ) { | |||
var routeVariable = mw.calculators.getVariable( calculation.getVariableIds().route ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: routeVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( routeVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | |||
// Don't show preparations if there isn't a dose with volume | |||
if( hasVolume ) { | |||
var preparations = calculation.drug.getPreparations(); | |||
if( preparations.length ) { | |||
var preparationVariable = mw.calculators.getVariable( calculation.getVariableIds().preparation ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: preparationVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( preparationVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | } | ||
} | |||
elements.dosage.$container.append( $dose, $options ); | |||
// Add elements to the contains array | |||
elements.dosage.contains.push( $dose, $options ); | |||
// Iterate over elementTypes since it is in order of rendering | |||
for( var iElementType in elementTypes ) { | |||
var elementType = elementTypes[ iElementType ]; | |||
var element = elements[ elementType ]; | |||
var $existingContainer = $( '#' + element.id ); | |||
if( $existingContainer.length ) { | |||
// If an input within this container has focus (i.e. the user changed a variable input which | |||
// triggered this rerender), don't rerender the element as this would destroy the focus on | |||
// the input. | |||
if( !$.contains( $existingContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { | |||
$existingContainer.replaceWith( element.$container ); | |||
} else { | |||
for( var containedElementId in element.contains ) { | |||
var $containedElement = element.contains[ containedElementId ]; | |||
var $existingContainedContainer = $( '#' + $containedElement.attr( 'id' ) ); | |||
if( $existingContainedContainer.length ) { | |||
if( !$.contains( $existingContainedContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { | |||
$existingContainedContainer.replaceWith( $containedElement ); | |||
} | |||
} | |||
} | } | ||
} | } | ||
} else { | |||
$( this ).append( elements[ elementType ].$container ); | |||
} | } | ||
], | } | ||
{ | calculationCount++; | ||
} ); | |||
// Activate popovers | |||
$( '[data-toggle="popover"]' ).popover(); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Add variables created by this calculation | |||
var variableIds = this.getVariableIds(); | |||
for( var variableType in variableIds ) { | |||
inputData.variables.optional.push( variableIds[ variableType ] ); | |||
} | |||
var dataTypes = inputData.getDataTypes(); | |||
// Data is only actually required if it is required by every dosage for the drug. | |||
// Data marked as required by an individual dosage that does not appear in every | |||
// dosage will be converted to optional. | |||
var requiredInputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Need a way to tell the first iteration of the loop to initialize the required variables to a value that | |||
// is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't | |||
// reinitialize). | |||
var initializeRequiredData = true; | |||
// Iterate through each dosage to determine variable dependency | |||
for( var iDosage in this.drug.dosages ) { | |||
var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData(); | |||
inputData = inputData.merge( dosageInputData ); | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
if( initializeRequiredData ) { | |||
requiredInputData[ dataType ].required = inputData[ dataType ].required; | |||
} else { | |||
// Data is only truly required if it is required by all dosage calculations, so use array intersection | |||
requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) { | |||
return dosageInputData[ dataType ].required.indexOf( index ) !== -1; | |||
} ); | |||
} | } | ||
] | } | ||
initializeRequiredData = false; | |||
} | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
// Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear | |||
// in requiredInputData). | |||
inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) { | |||
return requiredInputData[ dataType ].required.indexOf( index ) === -1; | |||
} ) ).filter( mw.calculators.uniqueValues ); | |||
inputData[ dataType ].required = requiredInputData[ dataType ].required; | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() { | |||
var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this ); | |||
data.drug = this.drug; | |||
data.indication = data[ this.getVariablePrefix() + 'indication' ] !== null ? | |||
mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).getValue() ) : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'indication' ]; | |||
data.preparation = data[ this.getVariablePrefix() + 'preparation' ] !== null ? | |||
this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).getValue() ] : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'preparation' ]; | |||
data.route = data[ this.getVariablePrefix() + 'route' ] !== null ? | |||
mw.calculators.getDrugRoute( mw.calculators.getVariable( this.getVariableIds().route ).getValue() ) : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'route' ]; | |||
return data; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getClassName = function() { | |||
return 'DrugDosageCalculation'; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getDescription = function() { | |||
var description = this.drug.description ? this.drug.description : ''; | |||
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].description ) { | |||
description += description ? '<br/><br/>' : ''; | |||
description += this.drug.dosages[ this.activeDosageId ].description; | |||
} | |||
return description; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getInfoButton = function( infoCount ) { | |||
var infoContainerId = this.getContainerId() + '-info'; | |||
if( infoCount ) { | |||
infoContainerId += '-' + infoCount; | |||
} | } | ||
var infoString = 'More information'; | |||
infoString += !mw.calculators.isMobile() ? ' about this dose' : ''; | |||
return $( '<div>', { | |||
class: this.getElementClasses( 'infoButton' ) | |||
} ) | |||
.append( $( '<a>', { | |||
'data-toggle': 'collapse', | |||
href: '#' + infoContainerId, | |||
role: 'button', | |||
'aria-expanded': 'false', | |||
'aria-controls': infoContainerId | |||
} ) | |||
.append( $( '<i>', { | |||
class: 'far fa-question-circle' | |||
} ), ' ' + infoString ) ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() { | |||
var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties(); | |||
return this.mergeProperties( inheritedProperties, { | |||
required: [ | |||
'drug' | |||
], | ], | ||
optional: [] | |||
{ | } ); | ||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getReferences = function() { | |||
var references = this.drug.references; | |||
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].references.length ) { | |||
references = references | |||
.concat( this.drug.dosages[ this.activeDosageId ].references ) | |||
] | .filter( mw.calculators.uniqueValues ); | ||
} | |||
return references; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getSearchString = function() { | |||
return this.drug.name + ' ' + this.drug.color + ' ' + this.drug.getIndications().join( ' ' ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleHtml = function() { | |||
var $title = $( '<a>', { | |||
class: this.getElementClasses( 'title-name' ), | |||
href: mw.util.getUrl( this.drug.name ), | |||
text: this.getTitleString() | |||
} ).css( 'background-color', '#fff' ); | |||
var highlightColor = this.drug.color.getHighlightColor(); | |||
if( highlightColor ) { | |||
var highlightContainerAttributes = { | |||
class: this.getElementClasses( 'title-highlight' ) | |||
}; | |||
var highlightContainerCss = {}; | |||
highlightContainerCss[ 'background' ] = highlightColor; | |||
$title = $( '<span>', highlightContainerAttributes ).append( $title ).css( highlightContainerCss ); | |||
} | } | ||
var primaryColor = this.drug.color.getPrimaryColor(); | |||
if( primaryColor ) { | |||
var backgroundContainerAttributes = { | |||
class: this.getElementClasses( 'title-background' ) | |||
}; | |||
var backgroundContainerCss = {}; | |||
if( this.drug.color.isStriped() ) { | |||
backgroundContainerCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + primaryColor; | |||
} else { | |||
backgroundContainerCss[ 'background'] = primaryColor; | |||
} | |||
$title = $( '<span>', backgroundContainerAttributes ).append( $title ).css( backgroundContainerCss ); | |||
} | } | ||
return $title; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleString = function() { | |||
return this.drug ? this.drug.name : ''; | |||
} | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() { | |||
return { | |||
indication: this.getVariablePrefix() + 'indication', | |||
preparation: this.getVariablePrefix() + 'preparation', | |||
route: this.getVariablePrefix() + 'route' | |||
}; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableOptions = function( variableId ) { | |||
if( variableId === this.getVariablePrefix() + 'indication' ) { | |||
return this.drug.getIndications(); | |||
mw.calculators. | } else if( variableId === this.getVariablePrefix() + 'preparation' ) { | ||
// Exclude preparations which require dilution | |||
return this.drug.getPreparations( true ); | |||
} else if( variableId === this.getVariablePrefix() + 'route' ) { | |||
return this.drug.getRoutes(); | |||
} | } | ||
} | }; | ||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() { | |||
return this.drug.id + '-'; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() { | |||
if( typeof this.drug === 'string' ) { | |||
var drug = mw.calculators.getDrug( this.drug ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' ); | |||
} | |||
this.drug = drug; | |||
} | } | ||
this.activeDosageId = null; | |||
this.updateVariables(); | |||
mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.updateVariables = function() { | |||
var variableIds = this.getVariableIds(); | |||
for( var variableType in variableIds ) { | |||
var variableId = variableIds[ variableType ]; | |||
var variableOptions = this.getVariableOptions( variableId ); | |||
var variableOptionValues = {}; | |||
var defaultOption = 0; | |||
for( var iVariableOption in variableOptions ) { | |||
var variableOption = variableOptions[ iVariableOption ]; | |||
defaultOption = variableOption.default ? iVariableOption : defaultOption; | |||
variableOptionValues[ variableOption.id ] = String( variableOption ); | |||
} | |||
var defaultValue = variableOptions.length ? variableOptions[ defaultOption ].id : null; | |||
var variable = mw.calculators.getVariable( variableId ); | |||
if( !variable ) { | |||
var newVariable = {}; | |||
// TODO put this somewhere else | |||
var abbreviation; | |||
if( variableType === 'indication' ) { | |||
abbreviation = 'Use'; | |||
} else if( variableType === 'route' ) { | |||
abbreviation = 'Route'; | |||
} else if( variableType === 'preparation' ) { | |||
abbreviation = 'Prep'; | |||
} | } | ||
newVariable[ variableId ] = { | |||
name: variableType.charAt(0).toUpperCase() + variableType.slice(1), | |||
abbreviation: abbreviation, | |||
} | type: 'string', | ||
] | defaultValue: defaultValue, | ||
options: variableOptionValues | |||
}; | |||
mw.calculators.addVariables( newVariable ); | |||
} else { | |||
// Probably not ideal to reach into the variable to change these things directly | |||
// Perhaps add helper functions to variable class | |||
mw.calculators.variables[ variableId ].defaultValue = defaultValue; | |||
mw.calculators.variables[ variableId ].options = variableOptionValues; | |||
} | |||
} | } | ||
} | }; | ||
mw.calculators.addDrugCalculators = function( moduleId, drugCalculatorData, className ) { | |||
className = className ? className : 'DrugDosageCalculator'; | |||
for( var drugCalculatorId in drugCalculatorData ) { | |||
drugCalculatorData[ drugCalculatorId ].module = moduleId; | |||
for( var iCalculation in drugCalculatorData[ drugCalculatorId].calculations ) { | |||
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ] = moduleId + '-' + | |||
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ]; | |||
} | |||
} | } | ||
} | |||
mw.calculators.addCalculators( moduleId, drugCalculatorData, className ); | |||
}; | |||
/** | /** | ||
* | * Class DrugDosageCalculator | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosageCalculator} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype ); | |||
mw.calculators.objectClasses.DrugDosageCalculator.prototype.getClassName = function() { | |||
return 'DrugDosageCalculator'; | |||
}; | |||
} | |||
}() ); | }() ); |
Revision as of 20:13, 30 August 2021
/** * @author Chris Rishel */ ( function() { var DEFAULT_DRUG_COLOR = 'default'; var DEFAULT_DRUG_POPULATION = 'general'; var DEFAULT_DRUG_ROUTE = 'iv'; mw.calculators.isValueDependent = function( value, variableId ) { // This may need generalized to support other variables in the future if( variableId === 'weight' ) { return value && value.formatUnits().match( /\/[\s(]*?kg/ ); } else { throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' ); } }; /** * Define units */ mw.calculators.addUnitsBases( { concentration: { toString: function( units ) { units = units.replace( ' pct', '%' ); units = units.replace( 'ug', 'mcg' ); return units; } }, mass: { toString: function( units ) { units = units.replace( 'ug', 'mcg' ); return units; } } } ); mw.calculators.addUnits( { mcg: { baseName: 'mass', definition: '1 ug' }, pct: { baseName: 'concentration', definition: '10 mg/mL' }, units: { baseName: 'mass_abstract', aliases: [ 'unit' ] }, vial: { baseName: 'volume_abstract' } } ); /** * DrugColor */ mw.calculators.drugColors = {}; mw.calculators.addDrugColors = function( drugColorData ) { var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData ); for( var drugColorId in drugColors ) { mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ]; } }; mw.calculators.getDrugColor = function( drugColorId ) { if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) { return mw.calculators.drugColors[ drugColorId ]; } else { return null; } }; /** * Class DrugColor * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugColor} * @constructor */ mw.calculators.objectClasses.DrugColor = function( propertyValues ) { var properties = { required: [ 'id' ], optional: [ 'parentColor', 'primaryColor', 'highlightColor', 'striped' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR; }; mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() { if( !this.parentColor ) { return null; } var parentDrugColor = mw.calculators.getDrugColor( this.parentColor ); if( !parentDrugColor ) { throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' ); } return parentDrugColor; }; mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() { if( this.highlightColor ) { return this.highlightColor; } else if( this.parentColor ) { return this.getParentDrugColor().getHighlightColor(); } }; mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() { if( this.primaryColor ) { return this.primaryColor; } else if( this.parentColor ) { return this.getParentDrugColor().getPrimaryColor(); } }; mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() { if( this.striped !== null ) { return this.striped; } else if( this.parentColor ) { return this.getParentDrugColor().isStriped(); } }; /** * DrugPopulation */ mw.calculators.drugPopulations = {}; mw.calculators.addDrugPopulations = function( drugPopulationData ) { var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData ); for( var drugPopulationId in drugPopulations ) { mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ]; } }; mw.calculators.getDrugPopulation = function( drugPopulationId ) { if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) { return mw.calculators.drugPopulations[ drugPopulationId ]; } else { return null; } }; /** * Class DrugPopulation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugPopulation} * @constructor */ mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'abbreviation', 'variables' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); if( this.variables ) { for( var variableId in this.variables ) { if( !mw.calculators.getVariable( variableId ) ) { throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' ); } this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ? math.unit( this.variables[ variableId ].min ) : null; this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ? math.unit( this.variables[ variableId ].max ) : null; } } else { this.variables = {}; } }; mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); for( var variableId in this.variables ) { inputData.variables.required.push( variableId ); } return inputData; }; mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) { // A return value of -1 indicates the data did not match the population definition for( var variableId in this.variables ) { if( !dataValues.hasOwnProperty( variableId ) ) { return -1; } if( this.variables[ variableId ].min && ( !dataValues[ variableId ] || !math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) ) { return -1; } if( this.variables[ variableId ].max && ( !dataValues[ variableId ] || !math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) ) { return -1; } } // If the data matches the population definition, the score corresponds to the number of variables in the // population definition. This should roughly correspond to the specificity of the population. return Object.keys( this.variables ).length; }; mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() { return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; }; /** * DrugRoute */ mw.calculators.drugRoutes = {}; mw.calculators.addDrugRoutes = function( drugRouteData ) { var drugRoutes = mw.calculators.createCalculatorObjects( 'DrugRoute', drugRouteData ); for( var drugRouteId in drugRoutes ) { mw.calculators.drugRoutes[ drugRouteId ] = drugRoutes[ drugRouteId ]; } }; mw.calculators.getDrugRoute = function( drugRouteId ) { if( mw.calculators.drugRoutes.hasOwnProperty( drugRouteId ) ) { return mw.calculators.drugRoutes[ drugRouteId ]; } else { return null; } }; /** * Class DrugRoute * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugRoute} * @constructor */ mw.calculators.objectClasses.DrugRoute = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'abbreviation', 'default' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); }; mw.calculators.objectClasses.DrugRoute.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugRoute.prototype.toString = function() { return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; }; /** * DrugIndication */ mw.calculators.drugIndications = {}; mw.calculators.addDrugIndications = function( drugIndicationData ) { var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData ); for( var drugIndicationId in drugIndications ) { mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ]; } }; mw.calculators.getDrugIndication = function( drugIndicationId ) { if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) { return mw.calculators.drugIndications[ drugIndicationId ]; } else { return null; } }; /** * Class DrugIndication * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugIndication} * @constructor */ mw.calculators.objectClasses.DrugIndication = function( propertyValues ) { var properties = { required: [ 'id', 'name' ], optional: [ 'abbreviation', 'default' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); }; mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugIndication.prototype.toString = function() { return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; }; /** * Drug */ mw.calculators.drugs = {}; mw.calculators.addDrugs = function( drugData ) { var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData ); for( var drugId in drugs ) { mw.calculators.drugs[ drugId ] = drugs[ drugId ]; var drugDosageCalculationId = mw.calculators.getDrugDosageCalculationId( drugId ); var drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); if( !drugDosageCalculation ) { var calculationData = {}; calculationData[ drugDosageCalculationId ] = { calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate, drug: drugId, type: 'drug' }; mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' ); drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); } drugDosageCalculation.setDependencies(); } }; mw.calculators.addDrugDosages = function( drugId, drugDosageData ) { var drug = mw.calculators.getDrug( drugId ); if( !drug ) { throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' ); } drug.addDosages( drugDosageData ); // Update calculation dependencies var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); drugDosageCalculation.updateVariables(); drugDosageCalculation.setDependencies(); }; mw.calculators.getDrug = function( drugId ) { if( mw.calculators.drugs.hasOwnProperty( drugId ) ) { return mw.calculators.drugs[ drugId ]; } else { return null; } }; /** * Class Drug * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.Drug} * @constructor */ mw.calculators.objectClasses.Drug = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); if( !this.color ) { this.color = DEFAULT_DRUG_COLOR; } var color = mw.calculators.getDrugColor( this.color ); if( !color ) { throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' ); } this.color = color; if( this.preparations ) { var preparationData = this.preparations; this.preparations = []; this.addPreparations( preparationData ); } else { this.preparations = []; } if( this.dosages ) { var dosageData = this.dosages; this.dosages = []; this.addDosages( dosageData ); } else { this.dosages = []; } this.references = this.references ? this.references : []; }; mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.Drug.prototype.addDosages = function( dosageData ) { var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', dosageData ); for( var dosageId in dosages ) { dosages[ dosageId ].id = this.dosages.length; this.dosages.push( dosages[ dosageId ] ); } }; mw.calculators.objectClasses.Drug.prototype.addPreparations = function( preparationData ) { var preparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', preparationData ); for( var preparationId in preparations ) { preparations[ preparationId ].id = this.preparations.length; this.preparations.push( preparations[ preparationId ] ); } }; mw.calculators.objectClasses.Drug.prototype.getIndications = function() { var indications = []; for( var iDosage in this.dosages ) { if( this.dosages[ iDosage ].indication ) { indications.push( this.dosages[ iDosage ].indication ); } } return indications.filter( mw.calculators.uniqueValues ); }; mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) { var populations = []; for( var iDosage in this.dosages ) { if( this.dosages[ iDosage ].population && ( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { populations.push( this.dosages[ iDosage ].population ); } } return populations.filter( mw.calculators.uniqueValues ); }; mw.calculators.objectClasses.Drug.prototype.getRoutes = function( indicationId ) { var routes = []; for( var iDosage in this.dosages ) { if( this.dosages[ iDosage ].route && ( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { routes.push( this.dosages[ iDosage ].route ); } } return routes.filter( mw.calculators.uniqueValues ); }; mw.calculators.objectClasses.Drug.prototype.getPreparations = function( excludeDilutionRequired ) { var preparations = this.preparations.filter( mw.calculators.uniqueValues ); if( excludeDilutionRequired ) { for( var iPreparation in preparations ) { if( preparations[ iPreparation ].dilutionRequired ) { delete preparations[ iPreparation ]; } } } return preparations; }; mw.calculators.objectClasses.Drug.prototype.getProperties = function() { return { required: [ 'id', 'name' ], optional: [ 'color', 'description', 'dosages', 'preparations', 'references' ] }; }; /** * DrugPreparation */ mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) { var drug = mw.calculators.getDrug( drugId ); if( !drug ) { throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' ); } drug.addPreparations( drugPreparationData ); var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); drugDosageCalculation.recalculate(); }; /** * Class DrugPreparation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugPreparation} * @constructor */ mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) { var properties = { required: [ 'id', 'concentration' ], optional: [ 'default', 'dilutionRequired', 'commonDilution' ] }; mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); this.concentration = this.concentration.replace( 'mcg', 'ug' ); this.concentration = math.unit( this.concentration ); }; mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() { // The units of concentration will always be of the form "mass / volume" // The regular expression matches all text leading up to the volume units return mw.calculators.getUnitsByBase( this.concentration ).volume; }; mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() { return mw.calculators.getValueString( this.concentration ); }; /** * Class DrugDosage * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosage} * @constructor */ mw.calculators.objectClasses.DrugDosage = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); var drugIndication = mw.calculators.getDrugIndication( this.indication ); if( !drugIndication ) { throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' ); } this.indication = drugIndication; this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION; var drugPopulation = mw.calculators.getDrugPopulation( this.population ); if( !drugPopulation ) { throw new Error( 'Invalid population "' + this.population + '" for drug dosage' ); } this.population = drugPopulation; this.references = this.references ? this.references : []; this.route = this.route ? this.route : DEFAULT_DRUG_ROUTE; var drugRoute = mw.calculators.getDrugRoute( this.route ); if( !drugRoute ) { throw new Error( 'Invalid route "' + this.route + '" for drug dosage' ); } this.route = drugRoute; // Add the dose objects to the drug var drugDoseData = this.dose; this.dose = []; this.addDoses( drugDoseData ); }; mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) { // Each dosage can have one or more associated doses. Ensure this value is an array. if( !Array.isArray( drugDoseData ) ) { drugDoseData = [ drugDoseData ]; } var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData ); for( var doseId in doses ) { doses[ doseId ].id = this.dose.length; this.dose.push( doses[ doseId ] ); } }; mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); inputData = inputData.merge( this.population.getCalculationData() ); for( var iDose in this.dose ) { inputData = inputData.merge( this.dose[ iDose ].getCalculationData() ); } return inputData; }; mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() { return { required: [ 'dose', 'id', 'indication' ], optional: [ 'description', 'population', 'route', 'references' ] }; }; mw.calculators.objectClasses.DrugDosage.prototype.hasInfo = function() { return this.description; }; /** * Class DrugDose * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDose} * @constructor */ mw.calculators.objectClasses.DrugDose = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); if( this.weightCalculation ) { var weightCalculationIds = this.weightCalculation; // weightCalculation property will contain references to the actual objects, so reinitialize this.weightCalculation = []; if( !Array.isArray( weightCalculationIds ) ) { weightCalculationIds = [ weightCalculationIds ]; } for( var iWeightCalculation in weightCalculationIds ) { var weightCalculationId = weightCalculationIds[ iWeightCalculation ]; var weightCalculation = mw.calculators.getCalculation( weightCalculationId ); if( !weightCalculation ) { throw new Error( 'Drug dose references weight calculation "' + weightCalculationId + '" which is not defined' ); } this.weightCalculation.push( weightCalculation ); } } else { this.weightCalculation = []; } var mathProperties = this.getMathProperties(); var isWeightDependent = false; for( var iMathProperty in mathProperties ) { var mathProperty = mathProperties[ iMathProperty ]; if( this[ mathProperty ] ) { // TODO consider making a UnitsBase.weight.fromString() this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' ); this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' ); this[ mathProperty ] = math.unit( this[ mathProperty ] ); if( mw.calculators.isValueDependent( this[ mathProperty ], 'weight' ) ) { isWeightDependent = true; } } else { this[ mathProperty ] = null; } } if( isWeightDependent ) { // Default is tbw this.weightCalculation.push( mw.calculators.getCalculation( 'tbw' ) ); } }; mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); mw.calculators.objectClasses.DrugDose.prototype.getAdministration = function() { var administration = ''; if( this.frequency ) { administration += administration ? ' ' : ''; administration += this.frequency; } if( this.duration ) { administration += administration ? ' ' : ''; administration += 'over ' + this.duration; } return administration; }; mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() { var calculationData = new mw.calculators.objectClasses.CalculationData(); for( var iWeightCalculation in this.weightCalculation ) { calculationData.calculations.optional.push( this.weightCalculation[ iWeightCalculation ].id ); } return calculationData; }; mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() { return [ 'dose', 'min', 'max', 'absoluteMin', 'absoluteMax' ]; }; mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() { return { required: [ 'id' ], optional: [ 'absoluteMax', 'absoluteMin', 'dose', 'duration', 'frequency', 'min', 'max', 'name', 'weightCalculation' ] }; }; mw.calculators.getDrugDosageCalculationId = function( drugId ) { return 'drugDosages-' + drugId; }; /** * Class DrugDosageCalculation * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosageCalculation} * @constructor */ mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); this.initialize(); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype ); mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) { var value = { message: null, population: null, preparation: data.preparation, dose: [] }; this.activeDosageId = null; if( !data.drug.dosages.length ) { value.message = 'No dose data'; return value; } // Determine which dosage to use var populationScores = []; for( var iDosage in data.drug.dosages ) { var drugDosage = data.drug.dosages[ iDosage ]; // If the indication and route do not match, set the score to -1 var populationScore = drugDosage.indication.id === data.indication.id && drugDosage.route.id === data.route.id ? drugDosage.population.getCalculationDataScore( data ) : -1; populationScores.push( populationScore ); } var maxPopulationScore = Math.max.apply( null, populationScores ); if( maxPopulationScore < 0 ) { value.message = 'No dose data for indication "' + String( data.indication ) + '" and route "' + String( data.route ) + '"'; return value; } // If there is more than one dosage with the same score, take the first. // This allows the data editor to decide which is most important. this.activeDosageId = populationScores.indexOf( maxPopulationScore ); var dosage = data.drug.dosages[ this.activeDosageId ]; // A dosage may contain multiple doses (e.g. induction and maintenance) for( var iDose in dosage.dose ) { var dose = dosage.dose[ iDose ]; var mathProperties = dose.getMathProperties(); var weightCalculation = null; var weightValue = null; // data.weightCalculation should be in order of preference, so take the first non-null value for( var iWeightCalculation in dose.weightCalculation ) { if( dose.weightCalculation[ iWeightCalculation ].value !== null ) { weightCalculation = dose.weightCalculation[ iWeightCalculation ]; weightValue = dose.weightCalculation[ iWeightCalculation ].value; break; } } // Initialize value properties for dose value.dose[ iDose ] = { massPerWeight: {}, mass: {}, volume: {}, weightCalculation: weightCalculation ? weightCalculation : null }; var massUnits; var volumeUnits; for( var iMathProperty in mathProperties ) { var mathProperty = mathProperties[ iMathProperty ]; var doseValue = dose[ mathProperty ]; if( doseValue ) { var doseUnitsByBase = mw.calculators.getUnitsByBase( doseValue ); if( doseUnitsByBase.hasOwnProperty( 'weight' ) ) { value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue; if( weightValue ) { massUnits = doseUnitsByBase.mass; if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { massUnits += '/' + doseUnitsByBase.time; } // For whatever reason math.format will simplify the units, but math.formatUnits will not // as a hack, we recreate a new unit value with the correct formatting of the result value.dose[ iDose ].mass[ mathProperty ] = math.unit( math.multiply( doseValue, weightValue ).format() ).to( massUnits ); } } else { value.dose[ iDose ].mass[ mathProperty ] = doseValue; } if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) { // Need a special case for pct if( data.preparation.concentration.formatUnits() === 'pct' ) { volumeUnits = 'mL'; } else { var preparationUnitsByBase = mw.calculators.getUnitsByBase( data.preparation.concentration ); volumeUnits = preparationUnitsByBase.volume; } if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { volumeUnits += '/' + doseUnitsByBase.time; } // Same hack as above to get units to simplify correctly value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ).to( volumeUnits ); } } } if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMin' ) ) { if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.max ) ) { // Both min and max are larger than the absolute max dose, so just convert to single dose. value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; delete value.dose[ iDose ].mass.min; delete value.dose[ iDose ].mass.max; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; delete value.dose[ iDose ].volume.min; delete value.dose[ iDose ].volume.max; } } else if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.min ) ) { value.dose[ iDose ].mass.min = value.dose[ iDose ].mass.absoluteMin; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { value.dose[ iDose ].volume.min = value.dose[ iDose ].volume.absoluteMin; } } else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.dose ) ) { value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; } } } if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMax' ) ) { if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.min ) ) { // Both min and max are larger than the absolute max dose, so just convert to single dose. value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; delete value.dose[ iDose ].mass.min; delete value.dose[ iDose ].mass.max; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; delete value.dose[ iDose ].volume.min; delete value.dose[ iDose ].volume.max; } } else if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.max ) ) { value.dose[ iDose ].mass.max = value.dose[ iDose ].mass.absoluteMax; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { value.dose[ iDose ].volume.max = value.dose[ iDose ].volume.absoluteMax; } } else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.dose ) ) { value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; } } } } return value; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() { var $calculationContainer = $( '.' + this.getContainerId() ); if( !$calculationContainer.length ) { return; } // Add all required classes $calculationContainer.addClass( 'border ' + this.getContainerClasses() ); // Add search phrases $calculationContainer.attr( 'data-search', this.getSearchString() ); // Store this object in a local variable since .each() will reassign this to the DOM object of each // calculation container. var calculation = this; var calculationCount = 0; // Eventually may implement different rendering, so we should regenerate // all elements with each iteration of the loop. // I.e. might show result in table and inline in 2 different places of article. $calculationContainer.each( function() { // Initalize the variables for all the elements of the calculation. These need to be in order of placement // in the calculation container var elementTypes = [ 'title', 'dosage', 'info' ]; var elements = {}; for( var iElementType in elementTypes ) { var elementType = elementTypes[ iElementType ]; // If an input contained by $container has user input focus, $container will not rerender (would be // annoying behavior to the user). However, if it contains subelements which should try to rerender, // add those elements to the contains property. elements[ elementType ] = { $container: null, contains: [], id: calculation.getContainerId() + '-' + elementType }; if( calculationCount ) { elements[ elementType ].id += '-' + calculationCount; } } // Create title element and append to container elements.title.$container = $( '<div>', { id: elements.title.id, class: 'col-12 border-bottom ' + calculation.getElementClasses( 'title' ) } ); elements.title.$container.append( calculation.getTitleHtml() ); if( calculation.hasInfo() ) { // Id of the info container should already be set by getInfo() elements.info.$container = calculation.getInfo(); } // Create the dosage element elements.dosage.$container = $( '<div>', { id: elements.dosage.id, class: 'row no-gutters ' + calculation.getElementClasses( 'dosage' ) } ); // Dose column var $dose = $( '<div>', { id: calculation.getContainerId() + '-dose', class: 'col-7 ' + calculation.getElementClasses( 'dose' ) } ); var dash = '-'; // The options column should only show the preparation if there is a calculated volume var hasVolume; if( !calculation.value || calculation.activeDosageId === null ) { if( calculation.value && calculation.value.hasOwnProperty( 'message' ) ) { $dose.append( $( '<i>' ).append( calculation.value.message ) ); } } else { var dosage = calculation.drug.dosages[ calculation.activeDosageId ]; if( dosage.population && dosage.population.id !== DEFAULT_DRUG_POPULATION ) { var $dosePopulation = $( '<div>', { class: calculation.getElementClasses( 'dose-info' ) } ); $dosePopulation .append( $( '<div>', { class: calculation.getElementClasses( 'dose-info-population' ) } ).append( String( dosage.population ) + ' dosing' ) ); $dose.append( $dosePopulation ); } var $doseData = $( '<div>', { class: calculation.getElementClasses( 'dose-data' ) } ); // This will iterate through the calculated doses. iDose should exactly correspond to doses within dosage // to allow referencing other properties of the dose. for( var iDose in calculation.value.dose ) { var dose = dosage.dose[ iDose ]; var doseValue = calculation.value.dose[ iDose ]; if( dose.name ) { $doseData.append( dose.name + '<br />' ); } var $doseList = $( '<ul>' ); var administration = dose.getAdministration(); var administrationDisplayed = false; var massPerWeightHtml = ''; if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) { massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose ); } else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) && doseValue.massPerWeight.hasOwnProperty( 'max' ) ) { // getValueString will simplify the value and may adjust the units var massPerWeightMinValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.min ) ); var massPerWeightMaxValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.max ) ); if( massPerWeightMinValue.formatUnits() !== massPerWeightMaxValue.formatUnits() ) { // If the units between min and max don't match, show both massPerWeightHtml += mw.calculators.getValueString( massPerWeightMinValue ); } else { massPerWeightHtml += mw.calculators.getValueNumber( massPerWeightMinValue ); } massPerWeightHtml += dash; massPerWeightHtml += mw.calculators.getValueString( massPerWeightMaxValue ); } if( massPerWeightHtml ) { if( administration && ! administrationDisplayed ) { massPerWeightHtml += ' ' + administration; administrationDisplayed = true; } var massPerWeightNotesHtml = ''; if( doseValue.mass.hasOwnProperty( 'absoluteMin' ) ) { massPerWeightNotesHtml += 'Min: ' + mw.calculators.getValueString( doseValue.mass.absoluteMin ); } else if( doseValue.mass.hasOwnProperty( 'absoluteMax' ) ) { massPerWeightNotesHtml += 'Max: ' + mw.calculators.getValueString( doseValue.mass.absoluteMax ); } if( dose.weightCalculation && dose.weightCalculation[ 0 ].id !== 'tbw' ) { if( massPerWeightNotesHtml ) { massPerWeightNotesHtml += ', '; } massPerWeightNotesHtml += dose.weightCalculation[ 0 ].getTitleString(); } if( massPerWeightNotesHtml ) { massPerWeightHtml += ' (' + massPerWeightNotesHtml + ')'; } massPerWeightHtml = $( '<li>' ).append( massPerWeightHtml ); $doseList.append( massPerWeightHtml ); } var massHtml = ''; if( doseValue.mass.hasOwnProperty( 'dose' ) ) { massHtml += mw.calculators.getValueString( doseValue.mass.dose ); } else if( doseValue.mass.hasOwnProperty( 'min' ) && doseValue.mass.hasOwnProperty( 'max' ) ) { // getValueString will simplify the value and may adjust the units var massMinValue = math.unit( mw.calculators.getValueString( doseValue.mass.min ) ); var massMaxValue = math.unit( mw.calculators.getValueString( doseValue.mass.max ) ); if( massMinValue.formatUnits() !== massMaxValue.formatUnits() ) { // If the units between min and max don't match, show both massHtml += mw.calculators.getValueString( massMinValue ); } else { massHtml += mw.calculators.getValueNumber( massMinValue ); } massHtml += dash; massHtml += mw.calculators.getValueString( massMaxValue ); } if( massHtml ) { if( administration && ! administrationDisplayed ) { massHtml += ' ' + administration; administrationDisplayed = true; } if( dose.weightCalculation.length && doseValue.weightCalculation.id !== dose.weightCalculation[ 0 ].id ) { var weightCalculationLabel = doseValue.weightCalculation.getTitleString(); var $weightCalculationInfoIcon = $( '<i>', { class: 'far fa-question-circle', 'data-toggle': 'popover', 'data-trigger': 'focus', 'data-content': String( doseValue.weightCalculation ) + ' is being used because data is missing for ' + String( dose.weightCalculation[ 0 ] ) + ': ' + dose.weightCalculation[ 0 ].message } ); massHtml += ' (' + weightCalculationLabel + ' ' + $weightCalculationInfoIcon[ 0 ].outerHTML + ')'; } massHtml = $( '<li>' ).append( massHtml ); $doseList.append( massHtml ); } var volumeHtml = ''; if( doseValue.volume.hasOwnProperty( 'dose' ) ) { volumeHtml += mw.calculators.getValueString( doseValue.volume.dose ); } else if( doseValue.volume.hasOwnProperty( 'min' ) && doseValue.volume.hasOwnProperty( 'max' ) ) { // getValueString will simplify the value and may adjust the units var volumeMinValue = math.unit( mw.calculators.getValueString( doseValue.volume.min ) ); var volumeMaxValue = math.unit( mw.calculators.getValueString( doseValue.volume.max ) ); if( volumeMinValue.formatUnits() !== volumeMaxValue.formatUnits() ) { // If the units between min and max don't match, show both volumeHtml += mw.calculators.getValueString( volumeMinValue ); } else { volumeHtml += mw.calculators.getValueNumber( volumeMinValue ); } volumeHtml += dash; volumeHtml += mw.calculators.getValueString( doseValue.volume.max ); } if( volumeHtml ) { if( administration && ! administrationDisplayed ) { volumeHtml += ' ' + administration; administrationDisplayed = true; } volumeHtml = $( '<li>' ).append( volumeHtml ); $doseList.append( volumeHtml ); hasVolume = true; } $doseData.append( $doseList ); } $dose.append( $doseData ); if( calculation.hasInfo() ) { $dose.append( calculation.getInfoButton( calculationCount ) ); } } // Options column var $options = $( '<div>', { id: calculation.getContainerId() + '-options', class: 'col-5 ' + calculation.getElementClasses( 'options' ) } ); var optionsRowClass = 'row no-gutters align-items-center'; if( !mw.calculators.isMobile() ) { optionsRowClass += ' mb-2'; } var optionLabelClass = mw.calculators.isMobile() ? 'col-4' : 'col-3'; var optionValueClass = mw.calculators.isMobile() ? 'col-8' : 'col-9'; var indications = calculation.drug.getIndications(); if( indications.length ) { var indicationVariable = mw.calculators.getVariable( calculation.getVariableIds().indication ); $options .append( $( '<div>', { class: optionsRowClass } ) .append( $( '<div>', { class: optionLabelClass, html: indicationVariable.getLabelString() + ' ' } ), $( '<div>', { class: optionValueClass } ) .append( indicationVariable.createInput({ class: 'calculator-container-input-DrugDosageCalculator-options', hideLabel: true, inline: true } ) ) ) ); } var routes = calculation.drug.getRoutes(); if( routes.length ) { var routeVariable = mw.calculators.getVariable( calculation.getVariableIds().route ); $options .append( $( '<div>', { class: optionsRowClass } ) .append( $( '<div>', { class: optionLabelClass, html: routeVariable.getLabelString() + ' ' } ), $( '<div>', { class: optionValueClass } ) .append( routeVariable.createInput({ class: 'calculator-container-input-DrugDosageCalculator-options', hideLabel: true, inline: true } ) ) ) ); } // Don't show preparations if there isn't a dose with volume if( hasVolume ) { var preparations = calculation.drug.getPreparations(); if( preparations.length ) { var preparationVariable = mw.calculators.getVariable( calculation.getVariableIds().preparation ); $options .append( $( '<div>', { class: optionsRowClass } ) .append( $( '<div>', { class: optionLabelClass, html: preparationVariable.getLabelString() + ' ' } ), $( '<div>', { class: optionValueClass } ) .append( preparationVariable.createInput({ class: 'calculator-container-input-DrugDosageCalculator-options', hideLabel: true, inline: true } ) ) ) ); } } elements.dosage.$container.append( $dose, $options ); // Add elements to the contains array elements.dosage.contains.push( $dose, $options ); // Iterate over elementTypes since it is in order of rendering for( var iElementType in elementTypes ) { var elementType = elementTypes[ iElementType ]; var element = elements[ elementType ]; var $existingContainer = $( '#' + element.id ); if( $existingContainer.length ) { // If an input within this container has focus (i.e. the user changed a variable input which // triggered this rerender), don't rerender the element as this would destroy the focus on // the input. if( !$.contains( $existingContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { $existingContainer.replaceWith( element.$container ); } else { for( var containedElementId in element.contains ) { var $containedElement = element.contains[ containedElementId ]; var $existingContainedContainer = $( '#' + $containedElement.attr( 'id' ) ); if( $existingContainedContainer.length ) { if( !$.contains( $existingContainedContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { $existingContainedContainer.replaceWith( $containedElement ); } } } } } else { $( this ).append( elements[ elementType ].$container ); } } calculationCount++; } ); // Activate popovers $( '[data-toggle="popover"]' ).popover(); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() { var inputData = new mw.calculators.objectClasses.CalculationData(); // Add variables created by this calculation var variableIds = this.getVariableIds(); for( var variableType in variableIds ) { inputData.variables.optional.push( variableIds[ variableType ] ); } var dataTypes = inputData.getDataTypes(); // Data is only actually required if it is required by every dosage for the drug. // Data marked as required by an individual dosage that does not appear in every // dosage will be converted to optional. var requiredInputData = new mw.calculators.objectClasses.CalculationData(); // Need a way to tell the first iteration of the loop to initialize the required variables to a value that // is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't // reinitialize). var initializeRequiredData = true; // Iterate through each dosage to determine variable dependency for( var iDosage in this.drug.dosages ) { var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData(); inputData = inputData.merge( dosageInputData ); for( var iDataType in dataTypes ) { var dataType = dataTypes[ iDataType ]; if( initializeRequiredData ) { requiredInputData[ dataType ].required = inputData[ dataType ].required; } else { // Data is only truly required if it is required by all dosage calculations, so use array intersection requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) { return dosageInputData[ dataType ].required.indexOf( index ) !== -1; } ); } } initializeRequiredData = false; } for( var iDataType in dataTypes ) { var dataType = dataTypes[ iDataType ]; // Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear // in requiredInputData). inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) { return requiredInputData[ dataType ].required.indexOf( index ) === -1; } ) ).filter( mw.calculators.uniqueValues ); inputData[ dataType ].required = requiredInputData[ dataType ].required; } return inputData; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() { var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this ); data.drug = this.drug; data.indication = data[ this.getVariablePrefix() + 'indication' ] !== null ? mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).getValue() ) : null; delete data[ this.getVariablePrefix() + 'indication' ]; data.preparation = data[ this.getVariablePrefix() + 'preparation' ] !== null ? this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).getValue() ] : null; delete data[ this.getVariablePrefix() + 'preparation' ]; data.route = data[ this.getVariablePrefix() + 'route' ] !== null ? mw.calculators.getDrugRoute( mw.calculators.getVariable( this.getVariableIds().route ).getValue() ) : null; delete data[ this.getVariablePrefix() + 'route' ]; return data; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getClassName = function() { return 'DrugDosageCalculation'; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getDescription = function() { var description = this.drug.description ? this.drug.description : ''; if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].description ) { description += description ? '<br/><br/>' : ''; description += this.drug.dosages[ this.activeDosageId ].description; } return description; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getInfoButton = function( infoCount ) { var infoContainerId = this.getContainerId() + '-info'; if( infoCount ) { infoContainerId += '-' + infoCount; } var infoString = 'More information'; infoString += !mw.calculators.isMobile() ? ' about this dose' : ''; return $( '<div>', { class: this.getElementClasses( 'infoButton' ) } ) .append( $( '<a>', { 'data-toggle': 'collapse', href: '#' + infoContainerId, role: 'button', 'aria-expanded': 'false', 'aria-controls': infoContainerId } ) .append( $( '<i>', { class: 'far fa-question-circle' } ), ' ' + infoString ) ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() { var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties(); return this.mergeProperties( inheritedProperties, { required: [ 'drug' ], optional: [] } ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getReferences = function() { var references = this.drug.references; if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].references.length ) { references = references .concat( this.drug.dosages[ this.activeDosageId ].references ) .filter( mw.calculators.uniqueValues ); } return references; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getSearchString = function() { return this.drug.name + ' ' + this.drug.color + ' ' + this.drug.getIndications().join( ' ' ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleHtml = function() { var $title = $( '<a>', { class: this.getElementClasses( 'title-name' ), href: mw.util.getUrl( this.drug.name ), text: this.getTitleString() } ).css( 'background-color', '#fff' ); var highlightColor = this.drug.color.getHighlightColor(); if( highlightColor ) { var highlightContainerAttributes = { class: this.getElementClasses( 'title-highlight' ) }; var highlightContainerCss = {}; highlightContainerCss[ 'background' ] = highlightColor; $title = $( '<span>', highlightContainerAttributes ).append( $title ).css( highlightContainerCss ); } var primaryColor = this.drug.color.getPrimaryColor(); if( primaryColor ) { var backgroundContainerAttributes = { class: this.getElementClasses( 'title-background' ) }; var backgroundContainerCss = {}; if( this.drug.color.isStriped() ) { backgroundContainerCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + primaryColor; } else { backgroundContainerCss[ 'background'] = primaryColor; } $title = $( '<span>', backgroundContainerAttributes ).append( $title ).css( backgroundContainerCss ); } return $title; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleString = function() { return this.drug ? this.drug.name : ''; } mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() { return { indication: this.getVariablePrefix() + 'indication', preparation: this.getVariablePrefix() + 'preparation', route: this.getVariablePrefix() + 'route' }; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableOptions = function( variableId ) { if( variableId === this.getVariablePrefix() + 'indication' ) { return this.drug.getIndications(); } else if( variableId === this.getVariablePrefix() + 'preparation' ) { // Exclude preparations which require dilution return this.drug.getPreparations( true ); } else if( variableId === this.getVariablePrefix() + 'route' ) { return this.drug.getRoutes(); } }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() { return this.drug.id + '-'; }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() { if( typeof this.drug === 'string' ) { var drug = mw.calculators.getDrug( this.drug ); if( !drug ) { throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' ); } this.drug = drug; } this.activeDosageId = null; this.updateVariables(); mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this ); }; mw.calculators.objectClasses.DrugDosageCalculation.prototype.updateVariables = function() { var variableIds = this.getVariableIds(); for( var variableType in variableIds ) { var variableId = variableIds[ variableType ]; var variableOptions = this.getVariableOptions( variableId ); var variableOptionValues = {}; var defaultOption = 0; for( var iVariableOption in variableOptions ) { var variableOption = variableOptions[ iVariableOption ]; defaultOption = variableOption.default ? iVariableOption : defaultOption; variableOptionValues[ variableOption.id ] = String( variableOption ); } var defaultValue = variableOptions.length ? variableOptions[ defaultOption ].id : null; var variable = mw.calculators.getVariable( variableId ); if( !variable ) { var newVariable = {}; // TODO put this somewhere else var abbreviation; if( variableType === 'indication' ) { abbreviation = 'Use'; } else if( variableType === 'route' ) { abbreviation = 'Route'; } else if( variableType === 'preparation' ) { abbreviation = 'Prep'; } newVariable[ variableId ] = { name: variableType.charAt(0).toUpperCase() + variableType.slice(1), abbreviation: abbreviation, type: 'string', defaultValue: defaultValue, options: variableOptionValues }; mw.calculators.addVariables( newVariable ); } else { // Probably not ideal to reach into the variable to change these things directly // Perhaps add helper functions to variable class mw.calculators.variables[ variableId ].defaultValue = defaultValue; mw.calculators.variables[ variableId ].options = variableOptionValues; } } }; mw.calculators.addDrugCalculators = function( moduleId, drugCalculatorData, className ) { className = className ? className : 'DrugDosageCalculator'; for( var drugCalculatorId in drugCalculatorData ) { drugCalculatorData[ drugCalculatorId ].module = moduleId; for( var iCalculation in drugCalculatorData[ drugCalculatorId].calculations ) { drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ] = moduleId + '-' + drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ]; } } mw.calculators.addCalculators( moduleId, drugCalculatorData, className ); }; /** * Class DrugDosageCalculator * @param {Object} propertyValues * @returns {mw.calculators.objectClasses.DrugDosageCalculator} * @constructor */ mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) { mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); }; mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype ); mw.calculators.objectClasses.DrugDosageCalculator.prototype.getClassName = function() { return 'DrugDosageCalculator'; }; }() );