Difference between revisions of "MediaWiki:Gadget-calculator-drugs-core.js"
From WikiAnesthesia
Chris Rishel (talk | contribs) |
Chris Rishel (talk | contribs) |
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*/ | */ | ||
( function() { | ( function() { | ||
var DEFAULT_DRUG_COLOR = 'default'; | |||
var DEFAULT_DRUG_POPULATION = 'general'; | |||
var DEFAULT_DRUG_ROUTE = 'iv'; | |||
mw.calculators.isValueDependent = function( value, variableId ) { | |||
// This may need generalized to support other variables in the future | |||
if( variableId === 'weight' ) { | |||
return value && value.formatUnits().match( /\/[\s(]*?kg/ ); | |||
} else { | |||
throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' ); | |||
} | |||
}; | |||
/** | /** | ||
* | * Define units | ||
*/ | */ | ||
mw.calculators. | mw.calculators.addUnitsBases( { | ||
concentration: { | |||
toString: function( units ) { | |||
units = units.replace( ' pct', '%' ); | |||
units = units.replace( 'ug', 'mcg' ); | |||
return units; | |||
} | |||
}, | }, | ||
mass: { | |||
toString: function( units ) { | |||
units = units.replace( 'ug', 'mcg' ); | |||
return units; | |||
} | |||
} | |||
} ); | |||
mw.calculators.addUnits( { | |||
mcg: { | |||
baseName: 'mass', | |||
definition: '1 ug' | |||
}, | }, | ||
pct: { | |||
baseName: 'concentration', | |||
definition: '10 mg/mL' | |||
}, | }, | ||
units: { | |||
baseName: 'mass_abstract', | |||
aliases: [ | |||
'unit' | |||
] | |||
}, | }, | ||
vial: { | |||
baseName: 'volume_abstract' | |||
} | } | ||
} ); | } ); | ||
| Line 79: | Line 60: | ||
/** | /** | ||
* | * DrugColor | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugColors = {}; | ||
mw.calculators.addDrugColors = function( drugColorData ) { | |||
var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData ); | |||
for( var drugColorId in drugColors ) { | |||
mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ]; | |||
} | } | ||
} | }; | ||
mw.calculators.getDrugColor = function( drugColorId ) { | |||
if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) { | |||
return mw.calculators.drugColors[ drugColorId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugColor | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugColor} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugColor = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id' | |||
], | |||
optional: [ | |||
'parentColor', | |||
'primaryColor', | |||
'highlightColor', | |||
}, | 'striped' | ||
] | |||
}; | |||
} | mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | ||
this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() { | |||
if( !this.parentColor ) { | |||
return null; | |||
} | |||
var parentDrugColor = mw.calculators.getDrugColor( this.parentColor ); | |||
if( !parentDrugColor ) { | |||
throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' ); | |||
} | } | ||
return parentDrugColor; | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() { | |||
if( this.highlightColor ) { | |||
return this.highlightColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getHighlightColor(); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() { | |||
if( this.primaryColor ) { | |||
return this.primaryColor; | |||
} else if( this.parentColor ) { | |||
return this.getParentDrugColor().getPrimaryColor(); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() { | |||
if( this.striped !== null ) { | |||
return this.striped; | |||
mw.calculators. | } else if( this.parentColor ) { | ||
return this.getParentDrugColor().isStriped(); | |||
} | |||
} | } | ||
} | }; | ||
/** | /** | ||
* | * DrugPopulation | ||
*/ | */ | ||
mw.calculators.drugPopulations = {}; | |||
mw.calculators.addDrugPopulations = function( drugPopulationData ) { | |||
var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData ); | |||
for( var drugPopulationId in drugPopulations ) { | |||
mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ]; | |||
} | |||
}; | |||
mw.calculators.getDrugPopulation = function( drugPopulationId ) { | |||
if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) { | |||
return mw.calculators.drugPopulations[ drugPopulationId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugPopulation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPopulation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
{ | 'abbreviation', | ||
'variables' | |||
] | |||
}; | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
if( this.variables ) { | |||
for( var variableId in this.variables ) { | |||
if( !mw.calculators.getVariable( variableId ) ) { | |||
throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' ); | |||
} | } | ||
] | |||
this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ? | |||
math.unit( this.variables[ variableId ].min ) : null; | |||
this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ? | |||
math.unit( this.variables[ variableId ].max ) : null; | |||
} | |||
} else { | |||
this.variables = {}; | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
for( var variableId in this.variables ) { | |||
inputData.variables.required.push( variableId ); | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) { | |||
// A return value of -1 indicates the data did not match the population definition | |||
for( var variableId in this.variables ) { | |||
if( !dataValues.hasOwnProperty( variableId ) ) { | |||
return -1; | |||
} | |||
if( this.variables[ variableId ].min && | |||
( !dataValues[ variableId ] || | |||
!math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) ) { | |||
return -1; | |||
} | |||
if( this.variables[ variableId ].max && | |||
( !dataValues[ variableId ] || | |||
!math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) ) { | |||
return -1; | |||
} | |||
} | } | ||
} ); | |||
// If the data matches the population definition, the score corresponds to the number of variables in the | |||
// population definition. This should roughly correspond to the specificity of the population. | |||
return Object.keys( this.variables ).length; | |||
}; | |||
mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * DrugRoute | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugRoutes = {}; | ||
mw.calculators.addDrugRoutes = function( drugRouteData ) { | |||
var drugRoutes = mw.calculators.createCalculatorObjects( 'DrugRoute', drugRouteData ); | |||
for( var drugRouteId in drugRoutes ) { | |||
mw.calculators.drugRoutes[ drugRouteId ] = drugRoutes[ drugRouteId ]; | |||
] | |||
} | } | ||
}; | |||
mw.calculators.getDrugRoute = function( drugRouteId ) { | |||
if( mw.calculators.drugRoutes.hasOwnProperty( drugRouteId ) ) { | |||
return mw.calculators.drugRoutes[ drugRouteId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugRoute | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugRoute} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugRoute = function( propertyValues ) { | ||
{ | var properties = { | ||
required: [ | |||
'id', | |||
'name' | |||
' | |||
], | ], | ||
optional: [ | |||
'abbreviation', | |||
'default' | |||
] | ] | ||
} | }; | ||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugRoute.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugRoute.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * DrugIndication | ||
*/ | */ | ||
mw.calculators. | mw.calculators.drugIndications = {}; | ||
mw.calculators.addDrugIndications = function( drugIndicationData ) { | |||
var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData ); | |||
for( var drugIndicationId in drugIndications ) { | |||
mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ]; | |||
] | |||
} | } | ||
}; | |||
mw.calculators.getDrugIndication = function( drugIndicationId ) { | |||
if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) { | |||
return mw.calculators.drugIndications[ drugIndicationId ]; | |||
} else { | |||
return null; | |||
} | |||
}; | |||
/** | /** | ||
* | * Class DrugIndication | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugIndication} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugIndication = function( propertyValues ) { | ||
var properties = { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
'abbreviation', | |||
'default' | |||
] | ] | ||
} | }; | ||
} ); | |||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugIndication.prototype.toString = function() { | |||
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name; | |||
}; | |||
/** | /** | ||
* | * Drug | ||
*/ | */ | ||
mw.calculators.addDrugs( { | mw.calculators.drugs = {}; | ||
mw.calculators.addDrugs = function( drugData ) { | |||
var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData ); | |||
{ | for( var drugId in drugs ) { | ||
mw.calculators.drugs[ drugId ] = drugs[ drugId ]; | |||
var drugDosageCalculationId = mw.calculators.getDrugDosageCalculationId( drugId ); | |||
var drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); | |||
} | if( !drugDosageCalculation ) { | ||
var calculationData = {}; | |||
calculationData[ drugDosageCalculationId ] = { | |||
calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate, | |||
drug: drugId, | |||
type: 'drug' | |||
}; | |||
] | |||
mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' ); | |||
drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId ); | |||
} | |||
drugDosageCalculation.setDependencies(); | |||
} | |||
}; | |||
mw.calculators.addDrugDosages = function( drugId, drugDosageData ) { | |||
var drug = mw.calculators.getDrug( drugId ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' ); | |||
} | |||
drug.addDosages( drugDosageData ); | |||
// Update calculation dependencies | |||
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); | |||
drugDosageCalculation.updateVariables(); | |||
drugDosageCalculation.setDependencies(); | |||
}; | |||
mw.calculators.getDrug = function( drugId ) { | |||
if( mw.calculators.drugs.hasOwnProperty( drugId ) ) { | |||
return mw.calculators.drugs[ drugId ]; | |||
} else { | |||
return null; | |||
} | } | ||
} | }; | ||
/** | /** | ||
* | * Class Drug | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.Drug} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.Drug = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
dosages: [ | if( !this.color ) { | ||
this.color = DEFAULT_DRUG_COLOR; | |||
} | |||
var color = mw.calculators.getDrugColor( this.color ); | |||
if( !color ) { | |||
throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' ); | |||
} | |||
this.color = color; | |||
if( this.preparations ) { | |||
var preparationData = this.preparations; | |||
this.preparations = []; | |||
this.addPreparations( preparationData ); | |||
} else { | |||
this.preparations = []; | |||
} | |||
if( this.dosages ) { | |||
var dosageData = this.dosages; | |||
this.dosages = []; | |||
this.addDosages( dosageData ); | |||
} else { | |||
this.dosages = []; | |||
} | |||
this.references = this.references ? this.references : []; | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.Drug.prototype.addDosages = function( dosageData ) { | |||
var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', dosageData ); | |||
for( var dosageId in dosages ) { | |||
dosages[ dosageId ].id = this.dosages.length; | |||
this.dosages.push( dosages[ dosageId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.addPreparations = function( preparationData ) { | |||
var preparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', preparationData ); | |||
for( var preparationId in preparations ) { | |||
preparations[ preparationId ].id = this.preparations.length; | |||
this.preparations.push( preparations[ preparationId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getIndications = function() { | |||
var indications = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].indication ) { | |||
indications.push( this.dosages[ iDosage ].indication ); | |||
} | |||
} | |||
return indications.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) { | |||
var populations = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].population && | |||
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { | |||
populations.push( this.dosages[ iDosage ].population ); | |||
} | |||
} | |||
return populations.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getRoutes = function( indicationId ) { | |||
var routes = []; | |||
for( var iDosage in this.dosages ) { | |||
if( this.dosages[ iDosage ].route && | |||
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) { | |||
routes.push( this.dosages[ iDosage ].route ); | |||
} | |||
} | |||
return routes.filter( mw.calculators.uniqueValues ); | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getPreparations = function( excludeDilutionRequired ) { | |||
var preparations = this.preparations.filter( mw.calculators.uniqueValues ); | |||
if( excludeDilutionRequired ) { | |||
for( var iPreparation in preparations ) { | |||
if( preparations[ iPreparation ].dilutionRequired ) { | |||
delete preparations[ iPreparation ]; | |||
} | } | ||
} | |||
} | |||
return preparations; | |||
}; | |||
mw.calculators.objectClasses.Drug.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'id', | |||
'name' | |||
], | ], | ||
optional: [ | |||
'color', | |||
'description', | |||
'dosages', | |||
'preparations', | |||
'references' | |||
] | ] | ||
} | }; | ||
} | }; | ||
/** | /** | ||
* | * DrugPreparation | ||
*/ | */ | ||
mw.calculators. | mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) { | ||
var drug = mw.calculators.getDrug( drugId ); | |||
if( !drug ) { | |||
throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' ); | |||
} | } | ||
} | |||
drug.addPreparations( drugPreparationData ); | |||
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) ); | |||
drugDosageCalculation.recalculate(); | |||
}; | |||
/** | /** | ||
* | * Class DrugPreparation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugPreparation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) { | ||
{ | var properties = { | ||
required: [ | |||
'id', | |||
'concentration' | |||
], | ], | ||
optional: [ | |||
'default', | |||
'dilutionRequired', | |||
'commonDilution' | |||
] | ] | ||
} | }; | ||
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues ); | |||
this.concentration = this.concentration.replace( 'mcg', 'ug' ); | |||
this.concentration = math.unit( this.concentration ); | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() { | |||
// The units of concentration will always be of the form "mass / volume" | |||
// The regular expression matches all text leading up to the volume units | |||
return mw.calculators.getUnitsByBase( this.concentration ).volume; | |||
}; | |||
mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() { | |||
return mw.calculators.getValueString( this.concentration ); | |||
}; | |||
/** | /** | ||
* | * Class DrugDosage | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosage} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosage = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
var drugIndication = mw.calculators.getDrugIndication( this.indication ); | |||
if( !drugIndication ) { | |||
throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' ); | |||
} | |||
this.indication = drugIndication; | |||
this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION; | |||
var drugPopulation = mw.calculators.getDrugPopulation( this.population ); | |||
if( !drugPopulation ) { | |||
throw new Error( 'Invalid population "' + this.population + '" for drug dosage' ); | |||
} | |||
this.population = drugPopulation; | |||
this.references = this.references ? this.references : []; | |||
this.route = this.route ? this.route : DEFAULT_DRUG_ROUTE; | |||
var drugRoute = mw.calculators.getDrugRoute( this.route ); | |||
if( !drugRoute ) { | |||
throw new Error( 'Invalid route "' + this.route + '" for drug dosage' ); | |||
} | |||
this.route = drugRoute; | |||
// Add the dose objects to the drug | |||
var drugDoseData = this.dose; | |||
this.dose = []; | |||
this.addDoses( drugDoseData ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) { | |||
// Each dosage can have one or more associated doses. Ensure this value is an array. | |||
if( !Array.isArray( drugDoseData ) ) { | |||
drugDoseData = [ drugDoseData ]; | |||
} | |||
var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData ); | |||
for( var doseId in doses ) { | |||
doses[ doseId ].id = this.dose.length; | |||
this.dose.push( doses[ doseId ] ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
inputData = inputData.merge( this.population.getCalculationData() ); | |||
for( var iDose in this.dose ) { | |||
inputData = inputData.merge( this.dose[ iDose ].getCalculationData() ); | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'dose', | |||
'id', | |||
'indication' | |||
], | ], | ||
optional: [ | |||
'description', | |||
'population', | |||
'route', | |||
'references' | |||
] | ] | ||
} | }; | ||
} ); | }; | ||
mw.calculators.objectClasses.DrugDosage.prototype.hasInfo = function() { | |||
return this.description; | |||
}; | |||
/** | /** | ||
* | * Class DrugDose | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDose} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDose = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
if( this.weightCalculation ) { | |||
var weightCalculationIds = this.weightCalculation; | |||
// weightCalculation property will contain references to the actual objects, so reinitialize | |||
this.weightCalculation = []; | |||
if( !Array.isArray( weightCalculationIds ) ) { | |||
weightCalculationIds = [ weightCalculationIds ]; | |||
} | |||
for( var iWeightCalculation in weightCalculationIds ) { | |||
var weightCalculationId = weightCalculationIds[ iWeightCalculation ]; | |||
var weightCalculation = mw.calculators.getCalculation( weightCalculationId ); | |||
if( !weightCalculation ) { | |||
throw new Error( 'Drug dose references weight calculation "' + weightCalculationId + '" which is not defined' ); | |||
} | } | ||
] | |||
this.weightCalculation.push( weightCalculation ); | |||
} | |||
} else { | |||
this.weightCalculation = []; | |||
} | |||
var mathProperties = this.getMathProperties(); | |||
var isWeightDependent = false; | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
if( this[ mathProperty ] ) { | |||
// TODO consider making a UnitsBase.weight.fromString() | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' ); | |||
this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' ); | |||
this[ mathProperty ] = math.unit( this[ mathProperty ] ); | |||
if( mw.calculators.isValueDependent( this[ mathProperty ], 'weight' ) ) { | |||
isWeightDependent = true; | |||
} | } | ||
] | } else { | ||
this[ mathProperty ] = null; | |||
} | |||
} | |||
if( isWeightDependent ) { | |||
// Default is tbw | |||
this.weightCalculation.push( mw.calculators.getCalculation( 'tbw' ) ); | |||
} | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype ); | |||
mw.calculators.objectClasses.DrugDose.prototype.getAdministration = function() { | |||
var administration = ''; | |||
if( this.frequency ) { | |||
administration += administration ? ' ' : ''; | |||
administration += this.frequency; | |||
} | |||
if( this.duration ) { | |||
administration += administration ? ' ' : ''; | |||
administration += 'over ' + this.duration; | |||
} | |||
return administration; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() { | |||
var calculationData = new mw.calculators.objectClasses.CalculationData(); | |||
for( var iWeightCalculation in this.weightCalculation ) { | |||
calculationData.calculations.optional.push( this.weightCalculation[ iWeightCalculation ].id ); | |||
} | } | ||
return calculationData; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() { | |||
return [ | |||
'dose', | |||
'min', | |||
'max', | |||
'absoluteMin', | |||
'absoluteMax' | |||
]; | |||
}; | |||
mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() { | |||
return { | |||
required: [ | |||
'id' | |||
], | ], | ||
optional: [ | |||
'absoluteMax', | |||
'absoluteMin', | |||
'dose', | |||
'duration', | |||
'frequency', | |||
'min', | |||
'max', | |||
'name', | |||
'weightCalculation' | |||
] | ] | ||
} | }; | ||
} | }; | ||
mw.calculators.getDrugDosageCalculationId = function( drugId ) { | |||
return 'drugDosages-' + drugId; | |||
}; | |||
/** | /** | ||
* | * Class DrugDosageCalculation | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosageCalculation} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
this.initialize(); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype ); | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) { | |||
var value = { | |||
message: null, | |||
] | population: null, | ||
dose | preparation: data.preparation, | ||
dose: [] | |||
}; | |||
this.activeDosageId = null; | |||
if( !data.drug.dosages.length ) { | |||
value.message = 'No dose data'; | |||
return value; | |||
} | |||
// Determine which dosage to use | |||
var populationScores = []; | |||
for( var iDosage in data.drug.dosages ) { | |||
var drugDosage = data.drug.dosages[ iDosage ]; | |||
// If the indication and route do not match, set the score to -1 | |||
var populationScore = | |||
drugDosage.indication.id === data.indication.id && drugDosage.route.id === data.route.id ? | |||
drugDosage.population.getCalculationDataScore( data ) : -1; | |||
populationScores.push( populationScore ); | |||
} | |||
var maxPopulationScore = Math.max.apply( null, populationScores ); | |||
if( maxPopulationScore < 0 ) { | |||
value.message = 'No dose data for indication "' + String( data.indication ) + '" and route "' + String( data.route ) + '"'; | |||
return value; | |||
} | |||
// If there is more than one dosage with the same score, take the first. | |||
// This allows the data editor to decide which is most important. | |||
this.activeDosageId = populationScores.indexOf( maxPopulationScore ); | |||
var dosage = data.drug.dosages[ this.activeDosageId ]; | |||
// A dosage may contain multiple doses (e.g. induction and maintenance) | |||
for( var iDose in dosage.dose ) { | |||
var dose = dosage.dose[ iDose ]; | |||
var mathProperties = dose.getMathProperties(); | |||
var weightCalculation = null; | |||
var weightValue = null; | |||
// data.weightCalculation should be in order of preference, so take the first non-null value | |||
for( var iWeightCalculation in dose.weightCalculation ) { | |||
if( dose.weightCalculation[ iWeightCalculation ].value !== null ) { | |||
weightCalculation = dose.weightCalculation[ iWeightCalculation ]; | |||
weightValue = dose.weightCalculation[ iWeightCalculation ].value; | |||
break; | |||
} | |||
} | |||
// Initialize value properties for dose | |||
value.dose[ iDose ] = { | |||
massPerWeight: {}, | |||
mass: {}, | |||
volume: {}, | |||
weightCalculation: weightCalculation ? weightCalculation : null | |||
}; | |||
var massUnits; | |||
var volumeUnits; | |||
for( var iMathProperty in mathProperties ) { | |||
var mathProperty = mathProperties[ iMathProperty ]; | |||
var doseValue = dose[ mathProperty ]; | |||
if( doseValue ) { | |||
var doseUnitsByBase = mw.calculators.getUnitsByBase( doseValue ); | |||
if( doseUnitsByBase.hasOwnProperty( 'weight' ) ) { | |||
value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue; | |||
if( weightValue ) { | |||
massUnits = doseUnitsByBase.mass; | |||
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { | |||
massUnits += '/' + doseUnitsByBase.time; | |||
} | |||
// For whatever reason math.format will simplify the units, but math.formatUnits will not | |||
// as a hack, we recreate a new unit value with the correct formatting of the result | |||
value.dose[ iDose ].mass[ mathProperty ] = math.unit( math.multiply( doseValue, weightValue ).format() ).to( massUnits ); | |||
} | } | ||
} else { | |||
value.dose[ iDose ].mass[ mathProperty ] = doseValue; | |||
} | |||
if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) { | |||
// Need a special case for pct | |||
if( data.preparation.concentration.formatUnits() === 'pct' ) { | |||
volumeUnits = 'mL'; | |||
} else { | |||
var preparationUnitsByBase = mw.calculators.getUnitsByBase( data.preparation.concentration ); | |||
volumeUnits = preparationUnitsByBase.volume; | |||
} | |||
} | } | ||
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) { | |||
volumeUnits += '/' + doseUnitsByBase.time; | |||
} | } | ||
// Same hack as above to get units to simplify correctly | |||
value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ).to( volumeUnits ); | |||
} | } | ||
} | } | ||
} | |||
if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMin' ) ) { | |||
if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.max ) ) { | |||
// Both min and max are larger than the absolute max dose, so just convert to single dose. | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; | |||
delete value.dose[ iDose ].mass.min; | |||
delete value.dose[ iDose ].mass.max; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; | |||
delete value.dose[ iDose ].volume.min; | |||
delete value.dose[ iDose ].volume.max; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.min ) ) { | |||
value.dose[ iDose ].mass.min = value.dose[ iDose ].mass.absoluteMin; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.min = value.dose[ iDose ].volume.absoluteMin; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.dose ) ) { | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin; | |||
} | } | ||
} | } | ||
} | |||
{ | if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMax' ) ) { | ||
if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.min ) ) { | |||
// Both min and max are larger than the absolute max dose, so just convert to single dose. | |||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; | |||
delete value.dose[ iDose ].mass.min; | |||
delete value.dose[ iDose ].mass.max; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; | |||
delete value.dose[ iDose ].volume.min; | |||
delete value.dose[ iDose ].volume.max; | |||
} | |||
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.max ) ) { | |||
value.dose[ iDose ].mass.max = value.dose[ iDose ].mass.absoluteMax; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
value.dose[ iDose ].volume.max = value.dose[ iDose ].volume.absoluteMax; | |||
} | } | ||
} | } else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.dose ) ) { | ||
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax; | |||
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) { | |||
dose | value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax; | ||
} | } | ||
} | } | ||
} | |||
} | |||
return value; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() { | |||
var $calculationContainer = $( '.' + this.getContainerId() ); | |||
if( !$calculationContainer.length ) { | |||
return; | |||
} | } | ||
// Add all required classes | |||
$calculationContainer.addClass( 'border ' + this.getContainerClasses() ); | |||
// Add search phrases | |||
$calculationContainer.attr( 'data-search', this.getSearchString() ); | |||
// Store this object in a local variable since .each() will reassign this to the DOM object of each | |||
// calculation container. | |||
var calculation = this; | |||
var calculationCount = 0; | |||
// Eventually may implement different rendering, so we should regenerate | |||
// all elements with each iteration of the loop. | |||
// I.e. might show result in table and inline in 2 different places of article. | |||
$calculationContainer.each( function() { | |||
// Initalize the variables for all the elements of the calculation. These need to be in order of placement | |||
// in the calculation container | |||
var elementTypes = [ | |||
'title', | |||
'dosage', | |||
'info' | |||
]; | |||
var elements = {}; | |||
for( var iElementType in elementTypes ) { | |||
var elementType = elementTypes[ iElementType ]; | |||
// If an input contained by $container has user input focus, $container will not rerender (would be | |||
// annoying behavior to the user). However, if it contains subelements which should try to rerender, | |||
// add those elements to the contains property. | |||
elements[ elementType ] = { | |||
$container: null, | |||
contains: [], | |||
id: calculation.getContainerId() + '-' + elementType | |||
}; | |||
if( calculationCount ) { | |||
elements[ elementType ].id += '-' + calculationCount; | |||
} | } | ||
} | |||
{ | // Create title element and append to container | ||
elements.title.$container = $( '<div>', { | |||
id: elements.title.id, | |||
class: 'col-12 border-bottom ' + calculation.getElementClasses( 'title' ) | |||
} ); | |||
elements.title.$container.append( calculation.getTitleHtml() ); | |||
if( calculation.hasInfo() ) { | |||
// Id of the info container should already be set by getInfo() | |||
elements.info.$container = calculation.getInfo(); | |||
} | |||
// Create the dosage element | |||
elements.dosage.$container = $( '<div>', { | |||
id: elements.dosage.id, | |||
class: 'row no-gutters ' + calculation.getElementClasses( 'dosage' ) | |||
} ); | |||
// Dose column | |||
var $dose = $( '<div>', { | |||
id: calculation.getContainerId() + '-dose', | |||
class: 'col-7 ' + calculation.getElementClasses( 'dose' ) | |||
} ); | |||
var dash = '-'; | |||
// The options column should only show the preparation if there is a calculated volume | |||
var hasVolume; | |||
if( !calculation.value || calculation.activeDosageId === null ) { | |||
if( calculation.value && calculation.value.hasOwnProperty( 'message' ) ) { | |||
$dose.append( $( '<i>' ).append( calculation.value.message ) ); | |||
} | } | ||
} else { | |||
var dosage = calculation.drug.dosages[ calculation.activeDosageId ]; | |||
if( dosage.population && dosage.population.id !== DEFAULT_DRUG_POPULATION ) { | |||
var $dosePopulation = $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-info' ) | |||
} ); | |||
$dosePopulation | |||
.append( $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-info-population' ) | |||
} ).append( String( dosage.population ) + ' dosing' ) ); | |||
$dose.append( $dosePopulation ); | |||
} | } | ||
var $doseData = $( '<div>', { | |||
class: calculation.getElementClasses( 'dose-data' ) | |||
} ); | |||
// This will iterate through the calculated doses. iDose should exactly correspond to doses within dosage | |||
// to allow referencing other properties of the dose. | |||
for( var iDose in calculation.value.dose ) { | |||
var dose = dosage.dose[ iDose ]; | |||
var doseValue = calculation.value.dose[ iDose ]; | |||
if( dose.name ) { | |||
$doseData.append( dose.name + '<br />' ); | |||
} | } | ||
var $doseList = $( '<ul>' ); | |||
var administration = dose.getAdministration(); | |||
dose | var administrationDisplayed = false; | ||
min | |||
max | var massPerWeightHtml = ''; | ||
if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) { | |||
massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose ); | |||
} else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) && | |||
doseValue.massPerWeight.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var massPerWeightMinValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.min ) ); | |||
var massPerWeightMaxValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.max ) ); | |||
if( massPerWeightMinValue.formatUnits() !== massPerWeightMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMinValue ); | |||
} else { | |||
massPerWeightHtml += mw.calculators.getValueNumber( massPerWeightMinValue ); | |||
} | |||
massPerWeightHtml += dash; | |||
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMaxValue ); | |||
} | } | ||
if( massPerWeightHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
massPerWeightHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
dose | } | ||
var massPerWeightNotesHtml = ''; | |||
if( doseValue.mass.hasOwnProperty( 'absoluteMin' ) ) { | |||
massPerWeightNotesHtml += 'Min: ' + mw.calculators.getValueString( doseValue.mass.absoluteMin ); | |||
} else if( doseValue.mass.hasOwnProperty( 'absoluteMax' ) ) { | |||
massPerWeightNotesHtml += 'Max: ' + mw.calculators.getValueString( doseValue.mass.absoluteMax ); | |||
} | |||
if( dose.weightCalculation && dose.weightCalculation[ 0 ].id !== 'tbw' ) { | |||
if( massPerWeightNotesHtml ) { | |||
massPerWeightNotesHtml += ', '; | |||
} | |||
massPerWeightNotesHtml += dose.weightCalculation[ 0 ].getTitleString(); | |||
} | |||
if( massPerWeightNotesHtml ) { | |||
massPerWeightHtml += ' (' + massPerWeightNotesHtml + ')'; | |||
} | |||
massPerWeightHtml = $( '<li>' ).append( massPerWeightHtml ); | |||
$doseList.append( massPerWeightHtml ); | |||
} | } | ||
var massHtml = ''; | |||
if( doseValue.mass.hasOwnProperty( 'dose' ) ) { | |||
massHtml += mw.calculators.getValueString( doseValue.mass.dose ); | |||
max | } else if( doseValue.mass.hasOwnProperty( 'min' ) && | ||
doseValue.mass.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var massMinValue = math.unit( mw.calculators.getValueString( doseValue.mass.min ) ); | |||
var massMaxValue = math.unit( mw.calculators.getValueString( doseValue.mass.max ) ); | |||
if( massMinValue.formatUnits() !== massMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
massHtml += mw.calculators.getValueString( massMinValue ); | |||
} else { | |||
massHtml += mw.calculators.getValueNumber( massMinValue ); | |||
} | |||
massHtml += dash; | |||
massHtml += mw.calculators.getValueString( massMaxValue ); | |||
} | } | ||
if( massHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
massHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
} | |||
if( dose.weightCalculation.length && doseValue.weightCalculation.id !== dose.weightCalculation[ 0 ].id ) { | |||
var weightCalculationLabel = doseValue.weightCalculation.getTitleString(); | |||
var $weightCalculationInfoIcon = $( '<i>', { | |||
class: 'far fa-question-circle', | |||
'data-toggle': 'popover', | |||
'data-trigger': 'focus', | |||
'data-content': String( doseValue.weightCalculation ) + | |||
' is being used because data is missing for ' + | |||
String( dose.weightCalculation[ 0 ] ) + ': ' + dose.weightCalculation[ 0 ].message | |||
} ); | |||
massHtml += ' (' + weightCalculationLabel + ' ' + $weightCalculationInfoIcon[ 0 ].outerHTML + ')'; | |||
} | } | ||
massHtml = $( '<li>' ).append( massHtml ); | |||
$doseList.append( massHtml ); | |||
} | |||
var volumeHtml = ''; | |||
if( doseValue.volume.hasOwnProperty( 'dose' ) ) { | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.dose ); | |||
} else if( doseValue.volume.hasOwnProperty( 'min' ) && | |||
doseValue.volume.hasOwnProperty( 'max' ) ) { | |||
// getValueString will simplify the value and may adjust the units | |||
var volumeMinValue = math.unit( mw.calculators.getValueString( doseValue.volume.min ) ); | |||
var volumeMaxValue = math.unit( mw.calculators.getValueString( doseValue.volume.max ) ); | |||
if( volumeMinValue.formatUnits() !== volumeMaxValue.formatUnits() ) { | |||
// If the units between min and max don't match, show both | |||
volumeHtml += mw.calculators.getValueString( volumeMinValue ); | |||
} else { | |||
volumeHtml += mw.calculators.getValueNumber( volumeMinValue ); | |||
} | |||
} | } | ||
volumeHtml += dash; | |||
volumeHtml += mw.calculators.getValueString( doseValue.volume.max ); | |||
} | |||
if( volumeHtml ) { | |||
if( administration && ! administrationDisplayed ) { | |||
volumeHtml += ' ' + administration; | |||
administrationDisplayed = true; | |||
} | } | ||
volumeHtml = $( '<li>' ).append( volumeHtml ); | |||
$doseList.append( volumeHtml ); | |||
hasVolume = true; | |||
} | } | ||
$doseData.append( $doseList ); | |||
} | } | ||
$dose.append( $doseData ); | |||
{ | |||
if( calculation.hasInfo() ) { | |||
$dose.append( calculation.getInfoButton( calculationCount ) ); | |||
} | } | ||
} | |||
// Options column | |||
var $options = $( '<div>', { | |||
id: calculation.getContainerId() + '-options', | |||
class: 'col-5 ' + calculation.getElementClasses( 'options' ) | |||
} ); | |||
var optionsRowClass = 'row no-gutters align-items-center'; | |||
if( !mw.calculators.isMobile() ) { | |||
optionsRowClass += ' mb-2'; | |||
} | |||
var optionLabelClass = mw.calculators.isMobile() ? 'col-4' : 'col-3'; | |||
var optionValueClass = mw.calculators.isMobile() ? 'col-8' : 'col-9'; | |||
var indications = calculation.drug.getIndications(); | |||
if( indications.length ) { | |||
var indicationVariable = mw.calculators.getVariable( calculation.getVariableIds().indication ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: indicationVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( indicationVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | |||
var routes = calculation.drug.getRoutes(); | |||
if( routes.length ) { | |||
var routeVariable = mw.calculators.getVariable( calculation.getVariableIds().route ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: routeVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( routeVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | |||
// Don't show preparations if there isn't a dose with volume | |||
if( hasVolume ) { | |||
var preparations = calculation.drug.getPreparations(); | |||
if( preparations.length ) { | |||
var preparationVariable = mw.calculators.getVariable( calculation.getVariableIds().preparation ); | |||
$options | |||
.append( $( '<div>', { | |||
class: optionsRowClass | |||
} ) | |||
.append( | |||
$( '<div>', { | |||
class: optionLabelClass, | |||
html: preparationVariable.getLabelString() + ' ' | |||
} ), | |||
$( '<div>', { | |||
class: optionValueClass | |||
} ) | |||
.append( preparationVariable.createInput({ | |||
class: 'calculator-container-input-DrugDosageCalculator-options', | |||
hideLabel: true, | |||
inline: true | |||
} ) ) ) ); | |||
} | } | ||
} | |||
elements.dosage.$container.append( $dose, $options ); | |||
// Add elements to the contains array | |||
elements.dosage.contains.push( $dose, $options ); | |||
// Iterate over elementTypes since it is in order of rendering | |||
for( var iElementType in elementTypes ) { | |||
var elementType = elementTypes[ iElementType ]; | |||
var element = elements[ elementType ]; | |||
var $existingContainer = $( '#' + element.id ); | |||
if( $existingContainer.length ) { | |||
// If an input within this container has focus (i.e. the user changed a variable input which | |||
// triggered this rerender), don't rerender the element as this would destroy the focus on | |||
// the input. | |||
if( !$.contains( $existingContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { | |||
$existingContainer.replaceWith( element.$container ); | |||
} else { | |||
for( var containedElementId in element.contains ) { | |||
var $containedElement = element.contains[ containedElementId ]; | |||
var $existingContainedContainer = $( '#' + $containedElement.attr( 'id' ) ); | |||
if( $existingContainedContainer.length ) { | |||
if( !$.contains( $existingContainedContainer[ 0 ], $( ':focus' )[ 0 ] ) ) { | |||
$existingContainedContainer.replaceWith( $containedElement ); | |||
} | |||
} | |||
} | } | ||
} | } | ||
} else { | |||
$( this ).append( elements[ elementType ].$container ); | |||
} | } | ||
], | } | ||
{ | calculationCount++; | ||
} ); | |||
// Activate popovers | |||
$( '[data-toggle="popover"]' ).popover(); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() { | |||
var inputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Add variables created by this calculation | |||
var variableIds = this.getVariableIds(); | |||
for( var variableType in variableIds ) { | |||
inputData.variables.optional.push( variableIds[ variableType ] ); | |||
} | |||
var dataTypes = inputData.getDataTypes(); | |||
// Data is only actually required if it is required by every dosage for the drug. | |||
// Data marked as required by an individual dosage that does not appear in every | |||
// dosage will be converted to optional. | |||
var requiredInputData = new mw.calculators.objectClasses.CalculationData(); | |||
// Need a way to tell the first iteration of the loop to initialize the required variables to a value that | |||
// is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't | |||
// reinitialize). | |||
var initializeRequiredData = true; | |||
// Iterate through each dosage to determine variable dependency | |||
for( var iDosage in this.drug.dosages ) { | |||
var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData(); | |||
inputData = inputData.merge( dosageInputData ); | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
if( initializeRequiredData ) { | |||
requiredInputData[ dataType ].required = inputData[ dataType ].required; | |||
} else { | |||
// Data is only truly required if it is required by all dosage calculations, so use array intersection | |||
requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) { | |||
return dosageInputData[ dataType ].required.indexOf( index ) !== -1; | |||
} ); | |||
} | } | ||
] | } | ||
initializeRequiredData = false; | |||
} | |||
for( var iDataType in dataTypes ) { | |||
var dataType = dataTypes[ iDataType ]; | |||
// Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear | |||
// in requiredInputData). | |||
inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) { | |||
return requiredInputData[ dataType ].required.indexOf( index ) === -1; | |||
} ) ).filter( mw.calculators.uniqueValues ); | |||
inputData[ dataType ].required = requiredInputData[ dataType ].required; | |||
} | |||
return inputData; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() { | |||
var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this ); | |||
data.drug = this.drug; | |||
data.indication = data[ this.getVariablePrefix() + 'indication' ] !== null ? | |||
mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).getValue() ) : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'indication' ]; | |||
data.preparation = data[ this.getVariablePrefix() + 'preparation' ] !== null ? | |||
this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).getValue() ] : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'preparation' ]; | |||
data.route = data[ this.getVariablePrefix() + 'route' ] !== null ? | |||
mw.calculators.getDrugRoute( mw.calculators.getVariable( this.getVariableIds().route ).getValue() ) : | |||
null; | |||
delete data[ this.getVariablePrefix() + 'route' ]; | |||
return data; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getClassName = function() { | |||
return 'DrugDosageCalculation'; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getDescription = function() { | |||
var description = this.drug.description ? this.drug.description : ''; | |||
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].description ) { | |||
description += description ? '<br/><br/>' : ''; | |||
description += this.drug.dosages[ this.activeDosageId ].description; | |||
} | |||
return description; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getInfoButton = function( infoCount ) { | |||
var infoContainerId = this.getContainerId() + '-info'; | |||
if( infoCount ) { | |||
infoContainerId += '-' + infoCount; | |||
} | } | ||
var infoString = 'More information'; | |||
infoString += !mw.calculators.isMobile() ? ' about this dose' : ''; | |||
return $( '<div>', { | |||
class: this.getElementClasses( 'infoButton' ) | |||
} ) | |||
.append( $( '<a>', { | |||
'data-toggle': 'collapse', | |||
href: '#' + infoContainerId, | |||
role: 'button', | |||
'aria-expanded': 'false', | |||
'aria-controls': infoContainerId | |||
} ) | |||
.append( $( '<i>', { | |||
class: 'far fa-question-circle' | |||
} ), ' ' + infoString ) ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() { | |||
var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties(); | |||
return this.mergeProperties( inheritedProperties, { | |||
required: [ | |||
'drug' | |||
], | ], | ||
optional: [] | |||
{ | } ); | ||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getReferences = function() { | |||
var references = this.drug.references; | |||
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].references.length ) { | |||
references = references | |||
.concat( this.drug.dosages[ this.activeDosageId ].references ) | |||
] | .filter( mw.calculators.uniqueValues ); | ||
} | |||
return references; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getSearchString = function() { | |||
return this.drug.name + ' ' + this.drug.color + ' ' + this.drug.getIndications().join( ' ' ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleHtml = function() { | |||
var $title = $( '<a>', { | |||
class: this.getElementClasses( 'title-name' ), | |||
href: mw.util.getUrl( this.drug.name ), | |||
text: this.getTitleString() | |||
} ).css( 'background-color', '#fff' ); | |||
var highlightColor = this.drug.color.getHighlightColor(); | |||
if( highlightColor ) { | |||
var highlightContainerAttributes = { | |||
class: this.getElementClasses( 'title-highlight' ) | |||
}; | |||
var highlightContainerCss = {}; | |||
highlightContainerCss[ 'background' ] = highlightColor; | |||
$title = $( '<span>', highlightContainerAttributes ).append( $title ).css( highlightContainerCss ); | |||
} | } | ||
var primaryColor = this.drug.color.getPrimaryColor(); | |||
if( primaryColor ) { | |||
var backgroundContainerAttributes = { | |||
class: this.getElementClasses( 'title-background' ) | |||
}; | |||
var backgroundContainerCss = {}; | |||
if( this.drug.color.isStriped() ) { | |||
backgroundContainerCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + primaryColor; | |||
} else { | |||
backgroundContainerCss[ 'background'] = primaryColor; | |||
} | |||
$title = $( '<span>', backgroundContainerAttributes ).append( $title ).css( backgroundContainerCss ); | |||
} | } | ||
return $title; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleString = function() { | |||
return this.drug ? this.drug.name : ''; | |||
} | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() { | |||
return { | |||
indication: this.getVariablePrefix() + 'indication', | |||
preparation: this.getVariablePrefix() + 'preparation', | |||
route: this.getVariablePrefix() + 'route' | |||
}; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableOptions = function( variableId ) { | |||
if( variableId === this.getVariablePrefix() + 'indication' ) { | |||
return this.drug.getIndications(); | |||
mw.calculators. | } else if( variableId === this.getVariablePrefix() + 'preparation' ) { | ||
// Exclude preparations which require dilution | |||
return this.drug.getPreparations( true ); | |||
} else if( variableId === this.getVariablePrefix() + 'route' ) { | |||
return this.drug.getRoutes(); | |||
} | } | ||
} | }; | ||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() { | |||
return this.drug.id + '-'; | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() { | |||
if( typeof this.drug === 'string' ) { | |||
var drug = mw.calculators.getDrug( this.drug ); | |||
if( !drug ) { | |||
throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' ); | |||
} | |||
this.drug = drug; | |||
} | } | ||
this.activeDosageId = null; | |||
this.updateVariables(); | |||
mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculation.prototype.updateVariables = function() { | |||
var variableIds = this.getVariableIds(); | |||
for( var variableType in variableIds ) { | |||
var variableId = variableIds[ variableType ]; | |||
var variableOptions = this.getVariableOptions( variableId ); | |||
var variableOptionValues = {}; | |||
var defaultOption = 0; | |||
for( var iVariableOption in variableOptions ) { | |||
var variableOption = variableOptions[ iVariableOption ]; | |||
defaultOption = variableOption.default ? iVariableOption : defaultOption; | |||
variableOptionValues[ variableOption.id ] = String( variableOption ); | |||
} | |||
var defaultValue = variableOptions.length ? variableOptions[ defaultOption ].id : null; | |||
var variable = mw.calculators.getVariable( variableId ); | |||
if( !variable ) { | |||
var newVariable = {}; | |||
// TODO put this somewhere else | |||
var abbreviation; | |||
if( variableType === 'indication' ) { | |||
abbreviation = 'Use'; | |||
} else if( variableType === 'route' ) { | |||
abbreviation = 'Route'; | |||
} else if( variableType === 'preparation' ) { | |||
abbreviation = 'Prep'; | |||
} | } | ||
newVariable[ variableId ] = { | |||
name: variableType.charAt(0).toUpperCase() + variableType.slice(1), | |||
abbreviation: abbreviation, | |||
} | type: 'string', | ||
] | defaultValue: defaultValue, | ||
options: variableOptionValues | |||
}; | |||
mw.calculators.addVariables( newVariable ); | |||
} else { | |||
// Probably not ideal to reach into the variable to change these things directly | |||
// Perhaps add helper functions to variable class | |||
mw.calculators.variables[ variableId ].defaultValue = defaultValue; | |||
mw.calculators.variables[ variableId ].options = variableOptionValues; | |||
} | |||
} | } | ||
} | }; | ||
mw.calculators.addDrugCalculators = function( moduleId, drugCalculatorData, className ) { | |||
className = className ? className : 'DrugDosageCalculator'; | |||
for( var drugCalculatorId in drugCalculatorData ) { | |||
drugCalculatorData[ drugCalculatorId ].module = moduleId; | |||
for( var iCalculation in drugCalculatorData[ drugCalculatorId].calculations ) { | |||
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ] = moduleId + '-' + | |||
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ]; | |||
} | |||
} | } | ||
} | |||
mw.calculators.addCalculators( moduleId, drugCalculatorData, className ); | |||
}; | |||
/** | /** | ||
* | * Class DrugDosageCalculator | ||
* @param {Object} propertyValues | |||
* @returns {mw.calculators.objectClasses.DrugDosageCalculator} | |||
* @constructor | |||
*/ | */ | ||
mw.calculators. | mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) { | ||
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues ); | |||
}; | |||
mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype ); | |||
mw.calculators.objectClasses.DrugDosageCalculator.prototype.getClassName = function() { | |||
return 'DrugDosageCalculator'; | |||
}; | |||
} | |||
}() ); | }() ); | ||
Revision as of 20:13, 30 August 2021
/**
* @author Chris Rishel
*/
( function() {
var DEFAULT_DRUG_COLOR = 'default';
var DEFAULT_DRUG_POPULATION = 'general';
var DEFAULT_DRUG_ROUTE = 'iv';
mw.calculators.isValueDependent = function( value, variableId ) {
// This may need generalized to support other variables in the future
if( variableId === 'weight' ) {
return value && value.formatUnits().match( /\/[\s(]*?kg/ );
} else {
throw new Error( 'Dependence "' + variableId + '" not supported by isValueDependent' );
}
};
/**
* Define units
*/
mw.calculators.addUnitsBases( {
concentration: {
toString: function( units ) {
units = units.replace( ' pct', '%' );
units = units.replace( 'ug', 'mcg' );
return units;
}
},
mass: {
toString: function( units ) {
units = units.replace( 'ug', 'mcg' );
return units;
}
}
} );
mw.calculators.addUnits( {
mcg: {
baseName: 'mass',
definition: '1 ug'
},
pct: {
baseName: 'concentration',
definition: '10 mg/mL'
},
units: {
baseName: 'mass_abstract',
aliases: [
'unit'
]
},
vial: {
baseName: 'volume_abstract'
}
} );
/**
* DrugColor
*/
mw.calculators.drugColors = {};
mw.calculators.addDrugColors = function( drugColorData ) {
var drugColors = mw.calculators.createCalculatorObjects( 'DrugColor', drugColorData );
for( var drugColorId in drugColors ) {
mw.calculators.drugColors[ drugColorId ] = drugColors[ drugColorId ];
}
};
mw.calculators.getDrugColor = function( drugColorId ) {
if( mw.calculators.drugColors.hasOwnProperty( drugColorId ) ) {
return mw.calculators.drugColors[ drugColorId ];
} else {
return null;
}
};
/**
* Class DrugColor
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugColor}
* @constructor
*/
mw.calculators.objectClasses.DrugColor = function( propertyValues ) {
var properties = {
required: [
'id'
],
optional: [
'parentColor',
'primaryColor',
'highlightColor',
'striped'
]
};
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues );
this.parentColor = this.parentColor || this.id === DEFAULT_DRUG_COLOR ? this.parentColor : DEFAULT_DRUG_COLOR;
};
mw.calculators.objectClasses.DrugColor.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugColor.prototype.getParentDrugColor = function() {
if( !this.parentColor ) {
return null;
}
var parentDrugColor = mw.calculators.getDrugColor( this.parentColor );
if( !parentDrugColor ) {
throw new Error( 'Parent drug color "' + this.parentColor + '" not found for drug color "' + this.id + '"' );
}
return parentDrugColor;
};
mw.calculators.objectClasses.DrugColor.prototype.getHighlightColor = function() {
if( this.highlightColor ) {
return this.highlightColor;
} else if( this.parentColor ) {
return this.getParentDrugColor().getHighlightColor();
}
};
mw.calculators.objectClasses.DrugColor.prototype.getPrimaryColor = function() {
if( this.primaryColor ) {
return this.primaryColor;
} else if( this.parentColor ) {
return this.getParentDrugColor().getPrimaryColor();
}
};
mw.calculators.objectClasses.DrugColor.prototype.isStriped = function() {
if( this.striped !== null ) {
return this.striped;
} else if( this.parentColor ) {
return this.getParentDrugColor().isStriped();
}
};
/**
* DrugPopulation
*/
mw.calculators.drugPopulations = {};
mw.calculators.addDrugPopulations = function( drugPopulationData ) {
var drugPopulations = mw.calculators.createCalculatorObjects( 'DrugPopulation', drugPopulationData );
for( var drugPopulationId in drugPopulations ) {
mw.calculators.drugPopulations[ drugPopulationId ] = drugPopulations[ drugPopulationId ];
}
};
mw.calculators.getDrugPopulation = function( drugPopulationId ) {
if( mw.calculators.drugPopulations.hasOwnProperty( drugPopulationId ) ) {
return mw.calculators.drugPopulations[ drugPopulationId ];
} else {
return null;
}
};
/**
* Class DrugPopulation
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugPopulation}
* @constructor
*/
mw.calculators.objectClasses.DrugPopulation = function( propertyValues ) {
var properties = {
required: [
'id',
'name'
],
optional: [
'abbreviation',
'variables'
]
};
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues );
if( this.variables ) {
for( var variableId in this.variables ) {
if( !mw.calculators.getVariable( variableId ) ) {
throw new Error( 'DrugPopulation variable "' + variableId + '" not defined' );
}
this.variables[ variableId ].min = this.variables[ variableId ].hasOwnProperty( 'min' ) ?
math.unit( this.variables[ variableId ].min ) : null;
this.variables[ variableId ].max = this.variables[ variableId ].hasOwnProperty( 'max' ) ?
math.unit( this.variables[ variableId ].max ) : null;
}
} else {
this.variables = {};
}
};
mw.calculators.objectClasses.DrugPopulation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationData = function() {
var inputData = new mw.calculators.objectClasses.CalculationData();
for( var variableId in this.variables ) {
inputData.variables.required.push( variableId );
}
return inputData;
};
mw.calculators.objectClasses.DrugPopulation.prototype.getCalculationDataScore = function( dataValues ) {
// A return value of -1 indicates the data did not match the population definition
for( var variableId in this.variables ) {
if( !dataValues.hasOwnProperty( variableId ) ) {
return -1;
}
if( this.variables[ variableId ].min &&
( !dataValues[ variableId ] ||
!math.largerEq( dataValues[ variableId ], this.variables[ variableId ].min ) ) ) {
return -1;
}
if( this.variables[ variableId ].max &&
( !dataValues[ variableId ] ||
!math.smallerEq( dataValues[ variableId ], this.variables[ variableId ].max ) ) ) {
return -1;
}
}
// If the data matches the population definition, the score corresponds to the number of variables in the
// population definition. This should roughly correspond to the specificity of the population.
return Object.keys( this.variables ).length;
};
mw.calculators.objectClasses.DrugPopulation.prototype.toString = function() {
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name;
};
/**
* DrugRoute
*/
mw.calculators.drugRoutes = {};
mw.calculators.addDrugRoutes = function( drugRouteData ) {
var drugRoutes = mw.calculators.createCalculatorObjects( 'DrugRoute', drugRouteData );
for( var drugRouteId in drugRoutes ) {
mw.calculators.drugRoutes[ drugRouteId ] = drugRoutes[ drugRouteId ];
}
};
mw.calculators.getDrugRoute = function( drugRouteId ) {
if( mw.calculators.drugRoutes.hasOwnProperty( drugRouteId ) ) {
return mw.calculators.drugRoutes[ drugRouteId ];
} else {
return null;
}
};
/**
* Class DrugRoute
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugRoute}
* @constructor
*/
mw.calculators.objectClasses.DrugRoute = function( propertyValues ) {
var properties = {
required: [
'id',
'name'
],
optional: [
'abbreviation',
'default'
]
};
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues );
};
mw.calculators.objectClasses.DrugRoute.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugRoute.prototype.toString = function() {
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name;
};
/**
* DrugIndication
*/
mw.calculators.drugIndications = {};
mw.calculators.addDrugIndications = function( drugIndicationData ) {
var drugIndications = mw.calculators.createCalculatorObjects( 'DrugIndication', drugIndicationData );
for( var drugIndicationId in drugIndications ) {
mw.calculators.drugIndications[ drugIndicationId ] = drugIndications[ drugIndicationId ];
}
};
mw.calculators.getDrugIndication = function( drugIndicationId ) {
if( mw.calculators.drugIndications.hasOwnProperty( drugIndicationId ) ) {
return mw.calculators.drugIndications[ drugIndicationId ];
} else {
return null;
}
};
/**
* Class DrugIndication
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugIndication}
* @constructor
*/
mw.calculators.objectClasses.DrugIndication = function( propertyValues ) {
var properties = {
required: [
'id',
'name'
],
optional: [
'abbreviation',
'default'
]
};
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues );
};
mw.calculators.objectClasses.DrugIndication.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugIndication.prototype.toString = function() {
return mw.calculators.isMobile() && this.abbreviation ? this.abbreviation : this.name;
};
/**
* Drug
*/
mw.calculators.drugs = {};
mw.calculators.addDrugs = function( drugData ) {
var drugs = mw.calculators.createCalculatorObjects( 'Drug', drugData );
for( var drugId in drugs ) {
mw.calculators.drugs[ drugId ] = drugs[ drugId ];
var drugDosageCalculationId = mw.calculators.getDrugDosageCalculationId( drugId );
var drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId );
if( !drugDosageCalculation ) {
var calculationData = {};
calculationData[ drugDosageCalculationId ] = {
calculate: mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate,
drug: drugId,
type: 'drug'
};
mw.calculators.addCalculations( calculationData, 'DrugDosageCalculation' );
drugDosageCalculation = mw.calculators.getCalculation( drugDosageCalculationId );
}
drugDosageCalculation.setDependencies();
}
};
mw.calculators.addDrugDosages = function( drugId, drugDosageData ) {
var drug = mw.calculators.getDrug( drugId );
if( !drug ) {
throw new Error( 'DrugDosage references drug "' + drugId + '" which is not defined' );
}
drug.addDosages( drugDosageData );
// Update calculation dependencies
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) );
drugDosageCalculation.updateVariables();
drugDosageCalculation.setDependencies();
};
mw.calculators.getDrug = function( drugId ) {
if( mw.calculators.drugs.hasOwnProperty( drugId ) ) {
return mw.calculators.drugs[ drugId ];
} else {
return null;
}
};
/**
* Class Drug
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.Drug}
* @constructor
*/
mw.calculators.objectClasses.Drug = function( propertyValues ) {
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues );
if( !this.color ) {
this.color = DEFAULT_DRUG_COLOR;
}
var color = mw.calculators.getDrugColor( this.color );
if( !color ) {
throw new Error( 'Invalid drug color "' + this.color + '" for drug "' + this.id + '"' );
}
this.color = color;
if( this.preparations ) {
var preparationData = this.preparations;
this.preparations = [];
this.addPreparations( preparationData );
} else {
this.preparations = [];
}
if( this.dosages ) {
var dosageData = this.dosages;
this.dosages = [];
this.addDosages( dosageData );
} else {
this.dosages = [];
}
this.references = this.references ? this.references : [];
};
mw.calculators.objectClasses.Drug.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.Drug.prototype.addDosages = function( dosageData ) {
var dosages = mw.calculators.createCalculatorObjects( 'DrugDosage', dosageData );
for( var dosageId in dosages ) {
dosages[ dosageId ].id = this.dosages.length;
this.dosages.push( dosages[ dosageId ] );
}
};
mw.calculators.objectClasses.Drug.prototype.addPreparations = function( preparationData ) {
var preparations = mw.calculators.createCalculatorObjects( 'DrugPreparation', preparationData );
for( var preparationId in preparations ) {
preparations[ preparationId ].id = this.preparations.length;
this.preparations.push( preparations[ preparationId ] );
}
};
mw.calculators.objectClasses.Drug.prototype.getIndications = function() {
var indications = [];
for( var iDosage in this.dosages ) {
if( this.dosages[ iDosage ].indication ) {
indications.push( this.dosages[ iDosage ].indication );
}
}
return indications.filter( mw.calculators.uniqueValues );
};
mw.calculators.objectClasses.Drug.prototype.getPopulations = function( indicationId ) {
var populations = [];
for( var iDosage in this.dosages ) {
if( this.dosages[ iDosage ].population &&
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) {
populations.push( this.dosages[ iDosage ].population );
}
}
return populations.filter( mw.calculators.uniqueValues );
};
mw.calculators.objectClasses.Drug.prototype.getRoutes = function( indicationId ) {
var routes = [];
for( var iDosage in this.dosages ) {
if( this.dosages[ iDosage ].route &&
( !indicationId || ( this.dosages[ iDosage ].indication && this.dosages[ iDosage ].indication.id === indicationId ) ) ) {
routes.push( this.dosages[ iDosage ].route );
}
}
return routes.filter( mw.calculators.uniqueValues );
};
mw.calculators.objectClasses.Drug.prototype.getPreparations = function( excludeDilutionRequired ) {
var preparations = this.preparations.filter( mw.calculators.uniqueValues );
if( excludeDilutionRequired ) {
for( var iPreparation in preparations ) {
if( preparations[ iPreparation ].dilutionRequired ) {
delete preparations[ iPreparation ];
}
}
}
return preparations;
};
mw.calculators.objectClasses.Drug.prototype.getProperties = function() {
return {
required: [
'id',
'name'
],
optional: [
'color',
'description',
'dosages',
'preparations',
'references'
]
};
};
/**
* DrugPreparation
*/
mw.calculators.addDrugPreparations = function( drugId, drugPreparationData ) {
var drug = mw.calculators.getDrug( drugId );
if( !drug ) {
throw new Error( 'DrugPreparation references drug "' + drugId + '" which is not defined' );
}
drug.addPreparations( drugPreparationData );
var drugDosageCalculation = mw.calculators.getCalculation( mw.calculators.getDrugDosageCalculationId( drugId ) );
drugDosageCalculation.recalculate();
};
/**
* Class DrugPreparation
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugPreparation}
* @constructor
*/
mw.calculators.objectClasses.DrugPreparation = function( propertyValues ) {
var properties = {
required: [
'id',
'concentration'
],
optional: [
'default',
'dilutionRequired',
'commonDilution'
]
};
mw.calculators.objectClasses.CalculatorObject.call( this, properties, propertyValues );
this.concentration = this.concentration.replace( 'mcg', 'ug' );
this.concentration = math.unit( this.concentration );
};
mw.calculators.objectClasses.DrugPreparation.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugPreparation.prototype.getVolumeUnits = function() {
// The units of concentration will always be of the form "mass / volume"
// The regular expression matches all text leading up to the volume units
return mw.calculators.getUnitsByBase( this.concentration ).volume;
};
mw.calculators.objectClasses.DrugPreparation.prototype.toString = function() {
return mw.calculators.getValueString( this.concentration );
};
/**
* Class DrugDosage
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugDosage}
* @constructor
*/
mw.calculators.objectClasses.DrugDosage = function( propertyValues ) {
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues );
var drugIndication = mw.calculators.getDrugIndication( this.indication );
if( !drugIndication ) {
throw new Error( 'Invalid indication "' + this.indication + '" for drug dosage' );
}
this.indication = drugIndication;
this.population = this.population ? this.population : DEFAULT_DRUG_POPULATION;
var drugPopulation = mw.calculators.getDrugPopulation( this.population );
if( !drugPopulation ) {
throw new Error( 'Invalid population "' + this.population + '" for drug dosage' );
}
this.population = drugPopulation;
this.references = this.references ? this.references : [];
this.route = this.route ? this.route : DEFAULT_DRUG_ROUTE;
var drugRoute = mw.calculators.getDrugRoute( this.route );
if( !drugRoute ) {
throw new Error( 'Invalid route "' + this.route + '" for drug dosage' );
}
this.route = drugRoute;
// Add the dose objects to the drug
var drugDoseData = this.dose;
this.dose = [];
this.addDoses( drugDoseData );
};
mw.calculators.objectClasses.DrugDosage.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugDosage.prototype.addDoses = function( drugDoseData ) {
// Each dosage can have one or more associated doses. Ensure this value is an array.
if( !Array.isArray( drugDoseData ) ) {
drugDoseData = [ drugDoseData ];
}
var doses = mw.calculators.createCalculatorObjects( 'DrugDose', drugDoseData );
for( var doseId in doses ) {
doses[ doseId ].id = this.dose.length;
this.dose.push( doses[ doseId ] );
}
};
mw.calculators.objectClasses.DrugDosage.prototype.getCalculationData = function() {
var inputData = new mw.calculators.objectClasses.CalculationData();
inputData = inputData.merge( this.population.getCalculationData() );
for( var iDose in this.dose ) {
inputData = inputData.merge( this.dose[ iDose ].getCalculationData() );
}
return inputData;
};
mw.calculators.objectClasses.DrugDosage.prototype.getProperties = function() {
return {
required: [
'dose',
'id',
'indication'
],
optional: [
'description',
'population',
'route',
'references'
]
};
};
mw.calculators.objectClasses.DrugDosage.prototype.hasInfo = function() {
return this.description;
};
/**
* Class DrugDose
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugDose}
* @constructor
*/
mw.calculators.objectClasses.DrugDose = function( propertyValues ) {
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues );
if( this.weightCalculation ) {
var weightCalculationIds = this.weightCalculation;
// weightCalculation property will contain references to the actual objects, so reinitialize
this.weightCalculation = [];
if( !Array.isArray( weightCalculationIds ) ) {
weightCalculationIds = [ weightCalculationIds ];
}
for( var iWeightCalculation in weightCalculationIds ) {
var weightCalculationId = weightCalculationIds[ iWeightCalculation ];
var weightCalculation = mw.calculators.getCalculation( weightCalculationId );
if( !weightCalculation ) {
throw new Error( 'Drug dose references weight calculation "' + weightCalculationId + '" which is not defined' );
}
this.weightCalculation.push( weightCalculation );
}
} else {
this.weightCalculation = [];
}
var mathProperties = this.getMathProperties();
var isWeightDependent = false;
for( var iMathProperty in mathProperties ) {
var mathProperty = mathProperties[ iMathProperty ];
if( this[ mathProperty ] ) {
// TODO consider making a UnitsBase.weight.fromString()
this[ mathProperty ] = this[ mathProperty ].replace( 'kg', 'kgwt' );
this[ mathProperty ] = this[ mathProperty ].replace( 'mcg', 'ug' );
this[ mathProperty ] = math.unit( this[ mathProperty ] );
if( mw.calculators.isValueDependent( this[ mathProperty ], 'weight' ) ) {
isWeightDependent = true;
}
} else {
this[ mathProperty ] = null;
}
}
if( isWeightDependent ) {
// Default is tbw
this.weightCalculation.push( mw.calculators.getCalculation( 'tbw' ) );
}
};
mw.calculators.objectClasses.DrugDose.prototype = Object.create( mw.calculators.objectClasses.CalculatorObject.prototype );
mw.calculators.objectClasses.DrugDose.prototype.getAdministration = function() {
var administration = '';
if( this.frequency ) {
administration += administration ? ' ' : '';
administration += this.frequency;
}
if( this.duration ) {
administration += administration ? ' ' : '';
administration += 'over ' + this.duration;
}
return administration;
};
mw.calculators.objectClasses.DrugDose.prototype.getCalculationData = function() {
var calculationData = new mw.calculators.objectClasses.CalculationData();
for( var iWeightCalculation in this.weightCalculation ) {
calculationData.calculations.optional.push( this.weightCalculation[ iWeightCalculation ].id );
}
return calculationData;
};
mw.calculators.objectClasses.DrugDose.prototype.getMathProperties = function() {
return [
'dose',
'min',
'max',
'absoluteMin',
'absoluteMax'
];
};
mw.calculators.objectClasses.DrugDose.prototype.getProperties = function() {
return {
required: [
'id'
],
optional: [
'absoluteMax',
'absoluteMin',
'dose',
'duration',
'frequency',
'min',
'max',
'name',
'weightCalculation'
]
};
};
mw.calculators.getDrugDosageCalculationId = function( drugId ) {
return 'drugDosages-' + drugId;
};
/**
* Class DrugDosageCalculation
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugDosageCalculation}
* @constructor
*/
mw.calculators.objectClasses.DrugDosageCalculation = function( propertyValues ) {
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues );
this.initialize();
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculation.prototype );
mw.calculators.objectClasses.DrugDosageCalculation.prototype.calculate = function( data ) {
var value = {
message: null,
population: null,
preparation: data.preparation,
dose: []
};
this.activeDosageId = null;
if( !data.drug.dosages.length ) {
value.message = 'No dose data';
return value;
}
// Determine which dosage to use
var populationScores = [];
for( var iDosage in data.drug.dosages ) {
var drugDosage = data.drug.dosages[ iDosage ];
// If the indication and route do not match, set the score to -1
var populationScore =
drugDosage.indication.id === data.indication.id && drugDosage.route.id === data.route.id ?
drugDosage.population.getCalculationDataScore( data ) : -1;
populationScores.push( populationScore );
}
var maxPopulationScore = Math.max.apply( null, populationScores );
if( maxPopulationScore < 0 ) {
value.message = 'No dose data for indication "' + String( data.indication ) + '" and route "' + String( data.route ) + '"';
return value;
}
// If there is more than one dosage with the same score, take the first.
// This allows the data editor to decide which is most important.
this.activeDosageId = populationScores.indexOf( maxPopulationScore );
var dosage = data.drug.dosages[ this.activeDosageId ];
// A dosage may contain multiple doses (e.g. induction and maintenance)
for( var iDose in dosage.dose ) {
var dose = dosage.dose[ iDose ];
var mathProperties = dose.getMathProperties();
var weightCalculation = null;
var weightValue = null;
// data.weightCalculation should be in order of preference, so take the first non-null value
for( var iWeightCalculation in dose.weightCalculation ) {
if( dose.weightCalculation[ iWeightCalculation ].value !== null ) {
weightCalculation = dose.weightCalculation[ iWeightCalculation ];
weightValue = dose.weightCalculation[ iWeightCalculation ].value;
break;
}
}
// Initialize value properties for dose
value.dose[ iDose ] = {
massPerWeight: {},
mass: {},
volume: {},
weightCalculation: weightCalculation ? weightCalculation : null
};
var massUnits;
var volumeUnits;
for( var iMathProperty in mathProperties ) {
var mathProperty = mathProperties[ iMathProperty ];
var doseValue = dose[ mathProperty ];
if( doseValue ) {
var doseUnitsByBase = mw.calculators.getUnitsByBase( doseValue );
if( doseUnitsByBase.hasOwnProperty( 'weight' ) ) {
value.dose[ iDose ].massPerWeight[ mathProperty ] = doseValue;
if( weightValue ) {
massUnits = doseUnitsByBase.mass;
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) {
massUnits += '/' + doseUnitsByBase.time;
}
// For whatever reason math.format will simplify the units, but math.formatUnits will not
// as a hack, we recreate a new unit value with the correct formatting of the result
value.dose[ iDose ].mass[ mathProperty ] = math.unit( math.multiply( doseValue, weightValue ).format() ).to( massUnits );
}
} else {
value.dose[ iDose ].mass[ mathProperty ] = doseValue;
}
if( data.preparation && value.dose[ iDose ].mass[ mathProperty ] ) {
// Need a special case for pct
if( data.preparation.concentration.formatUnits() === 'pct' ) {
volumeUnits = 'mL';
} else {
var preparationUnitsByBase = mw.calculators.getUnitsByBase( data.preparation.concentration );
volumeUnits = preparationUnitsByBase.volume;
}
if( doseUnitsByBase.hasOwnProperty( 'time' ) ) {
volumeUnits += '/' + doseUnitsByBase.time;
}
// Same hack as above to get units to simplify correctly
value.dose[ iDose ].volume[ mathProperty ] = math.unit( math.multiply( value.dose[ iDose ].mass[ mathProperty ], math.divide( 1, data.preparation.concentration ) ).format() ).to( volumeUnits );
}
}
}
if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMin' ) ) {
if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.max ) ) {
// Both min and max are larger than the absolute max dose, so just convert to single dose.
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin;
delete value.dose[ iDose ].mass.min;
delete value.dose[ iDose ].mass.max;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) {
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin;
delete value.dose[ iDose ].volume.min;
delete value.dose[ iDose ].volume.max;
}
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.min ) ) {
value.dose[ iDose ].mass.min = value.dose[ iDose ].mass.absoluteMin;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) {
value.dose[ iDose ].volume.min = value.dose[ iDose ].volume.absoluteMin;
}
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.larger( value.dose[ iDose ].mass.absoluteMin, value.dose[ iDose ].mass.dose ) ) {
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMin;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMin' ) ) {
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMin;
}
}
}
if( value.dose[ iDose ].mass.hasOwnProperty( 'absoluteMax' ) ) {
if( value.dose[ iDose ].mass.hasOwnProperty( 'min' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.min ) ) {
// Both min and max are larger than the absolute max dose, so just convert to single dose.
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax;
delete value.dose[ iDose ].mass.min;
delete value.dose[ iDose ].mass.max;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) {
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax;
delete value.dose[ iDose ].volume.min;
delete value.dose[ iDose ].volume.max;
}
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'max' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.max ) ) {
value.dose[ iDose ].mass.max = value.dose[ iDose ].mass.absoluteMax;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) {
value.dose[ iDose ].volume.max = value.dose[ iDose ].volume.absoluteMax;
}
} else if( value.dose[ iDose ].mass.hasOwnProperty( 'dose' ) && math.smaller( value.dose[ iDose ].mass.absoluteMax, value.dose[ iDose ].mass.dose ) ) {
value.dose[ iDose ].mass.dose = value.dose[ iDose ].mass.absoluteMax;
if( value.dose[ iDose ].volume.hasOwnProperty( 'absoluteMax' ) ) {
value.dose[ iDose ].volume.dose = value.dose[ iDose ].volume.absoluteMax;
}
}
}
}
return value;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.doRender = function() {
var $calculationContainer = $( '.' + this.getContainerId() );
if( !$calculationContainer.length ) {
return;
}
// Add all required classes
$calculationContainer.addClass( 'border ' + this.getContainerClasses() );
// Add search phrases
$calculationContainer.attr( 'data-search', this.getSearchString() );
// Store this object in a local variable since .each() will reassign this to the DOM object of each
// calculation container.
var calculation = this;
var calculationCount = 0;
// Eventually may implement different rendering, so we should regenerate
// all elements with each iteration of the loop.
// I.e. might show result in table and inline in 2 different places of article.
$calculationContainer.each( function() {
// Initalize the variables for all the elements of the calculation. These need to be in order of placement
// in the calculation container
var elementTypes = [
'title',
'dosage',
'info'
];
var elements = {};
for( var iElementType in elementTypes ) {
var elementType = elementTypes[ iElementType ];
// If an input contained by $container has user input focus, $container will not rerender (would be
// annoying behavior to the user). However, if it contains subelements which should try to rerender,
// add those elements to the contains property.
elements[ elementType ] = {
$container: null,
contains: [],
id: calculation.getContainerId() + '-' + elementType
};
if( calculationCount ) {
elements[ elementType ].id += '-' + calculationCount;
}
}
// Create title element and append to container
elements.title.$container = $( '<div>', {
id: elements.title.id,
class: 'col-12 border-bottom ' + calculation.getElementClasses( 'title' )
} );
elements.title.$container.append( calculation.getTitleHtml() );
if( calculation.hasInfo() ) {
// Id of the info container should already be set by getInfo()
elements.info.$container = calculation.getInfo();
}
// Create the dosage element
elements.dosage.$container = $( '<div>', {
id: elements.dosage.id,
class: 'row no-gutters ' + calculation.getElementClasses( 'dosage' )
} );
// Dose column
var $dose = $( '<div>', {
id: calculation.getContainerId() + '-dose',
class: 'col-7 ' + calculation.getElementClasses( 'dose' )
} );
var dash = '-';
// The options column should only show the preparation if there is a calculated volume
var hasVolume;
if( !calculation.value || calculation.activeDosageId === null ) {
if( calculation.value && calculation.value.hasOwnProperty( 'message' ) ) {
$dose.append( $( '<i>' ).append( calculation.value.message ) );
}
} else {
var dosage = calculation.drug.dosages[ calculation.activeDosageId ];
if( dosage.population && dosage.population.id !== DEFAULT_DRUG_POPULATION ) {
var $dosePopulation = $( '<div>', {
class: calculation.getElementClasses( 'dose-info' )
} );
$dosePopulation
.append( $( '<div>', {
class: calculation.getElementClasses( 'dose-info-population' )
} ).append( String( dosage.population ) + ' dosing' ) );
$dose.append( $dosePopulation );
}
var $doseData = $( '<div>', {
class: calculation.getElementClasses( 'dose-data' )
} );
// This will iterate through the calculated doses. iDose should exactly correspond to doses within dosage
// to allow referencing other properties of the dose.
for( var iDose in calculation.value.dose ) {
var dose = dosage.dose[ iDose ];
var doseValue = calculation.value.dose[ iDose ];
if( dose.name ) {
$doseData.append( dose.name + '<br />' );
}
var $doseList = $( '<ul>' );
var administration = dose.getAdministration();
var administrationDisplayed = false;
var massPerWeightHtml = '';
if( doseValue.massPerWeight.hasOwnProperty( 'dose' ) ) {
massPerWeightHtml += mw.calculators.getValueString( doseValue.massPerWeight.dose );
} else if( doseValue.massPerWeight.hasOwnProperty( 'min' ) &&
doseValue.massPerWeight.hasOwnProperty( 'max' ) ) {
// getValueString will simplify the value and may adjust the units
var massPerWeightMinValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.min ) );
var massPerWeightMaxValue = math.unit( mw.calculators.getValueString( doseValue.massPerWeight.max ) );
if( massPerWeightMinValue.formatUnits() !== massPerWeightMaxValue.formatUnits() ) {
// If the units between min and max don't match, show both
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMinValue );
} else {
massPerWeightHtml += mw.calculators.getValueNumber( massPerWeightMinValue );
}
massPerWeightHtml += dash;
massPerWeightHtml += mw.calculators.getValueString( massPerWeightMaxValue );
}
if( massPerWeightHtml ) {
if( administration && ! administrationDisplayed ) {
massPerWeightHtml += ' ' + administration;
administrationDisplayed = true;
}
var massPerWeightNotesHtml = '';
if( doseValue.mass.hasOwnProperty( 'absoluteMin' ) ) {
massPerWeightNotesHtml += 'Min: ' + mw.calculators.getValueString( doseValue.mass.absoluteMin );
} else if( doseValue.mass.hasOwnProperty( 'absoluteMax' ) ) {
massPerWeightNotesHtml += 'Max: ' + mw.calculators.getValueString( doseValue.mass.absoluteMax );
}
if( dose.weightCalculation && dose.weightCalculation[ 0 ].id !== 'tbw' ) {
if( massPerWeightNotesHtml ) {
massPerWeightNotesHtml += ', ';
}
massPerWeightNotesHtml += dose.weightCalculation[ 0 ].getTitleString();
}
if( massPerWeightNotesHtml ) {
massPerWeightHtml += ' (' + massPerWeightNotesHtml + ')';
}
massPerWeightHtml = $( '<li>' ).append( massPerWeightHtml );
$doseList.append( massPerWeightHtml );
}
var massHtml = '';
if( doseValue.mass.hasOwnProperty( 'dose' ) ) {
massHtml += mw.calculators.getValueString( doseValue.mass.dose );
} else if( doseValue.mass.hasOwnProperty( 'min' ) &&
doseValue.mass.hasOwnProperty( 'max' ) ) {
// getValueString will simplify the value and may adjust the units
var massMinValue = math.unit( mw.calculators.getValueString( doseValue.mass.min ) );
var massMaxValue = math.unit( mw.calculators.getValueString( doseValue.mass.max ) );
if( massMinValue.formatUnits() !== massMaxValue.formatUnits() ) {
// If the units between min and max don't match, show both
massHtml += mw.calculators.getValueString( massMinValue );
} else {
massHtml += mw.calculators.getValueNumber( massMinValue );
}
massHtml += dash;
massHtml += mw.calculators.getValueString( massMaxValue );
}
if( massHtml ) {
if( administration && ! administrationDisplayed ) {
massHtml += ' ' + administration;
administrationDisplayed = true;
}
if( dose.weightCalculation.length && doseValue.weightCalculation.id !== dose.weightCalculation[ 0 ].id ) {
var weightCalculationLabel = doseValue.weightCalculation.getTitleString();
var $weightCalculationInfoIcon = $( '<i>', {
class: 'far fa-question-circle',
'data-toggle': 'popover',
'data-trigger': 'focus',
'data-content': String( doseValue.weightCalculation ) +
' is being used because data is missing for ' +
String( dose.weightCalculation[ 0 ] ) + ': ' + dose.weightCalculation[ 0 ].message
} );
massHtml += ' (' + weightCalculationLabel + ' ' + $weightCalculationInfoIcon[ 0 ].outerHTML + ')';
}
massHtml = $( '<li>' ).append( massHtml );
$doseList.append( massHtml );
}
var volumeHtml = '';
if( doseValue.volume.hasOwnProperty( 'dose' ) ) {
volumeHtml += mw.calculators.getValueString( doseValue.volume.dose );
} else if( doseValue.volume.hasOwnProperty( 'min' ) &&
doseValue.volume.hasOwnProperty( 'max' ) ) {
// getValueString will simplify the value and may adjust the units
var volumeMinValue = math.unit( mw.calculators.getValueString( doseValue.volume.min ) );
var volumeMaxValue = math.unit( mw.calculators.getValueString( doseValue.volume.max ) );
if( volumeMinValue.formatUnits() !== volumeMaxValue.formatUnits() ) {
// If the units between min and max don't match, show both
volumeHtml += mw.calculators.getValueString( volumeMinValue );
} else {
volumeHtml += mw.calculators.getValueNumber( volumeMinValue );
}
volumeHtml += dash;
volumeHtml += mw.calculators.getValueString( doseValue.volume.max );
}
if( volumeHtml ) {
if( administration && ! administrationDisplayed ) {
volumeHtml += ' ' + administration;
administrationDisplayed = true;
}
volumeHtml = $( '<li>' ).append( volumeHtml );
$doseList.append( volumeHtml );
hasVolume = true;
}
$doseData.append( $doseList );
}
$dose.append( $doseData );
if( calculation.hasInfo() ) {
$dose.append( calculation.getInfoButton( calculationCount ) );
}
}
// Options column
var $options = $( '<div>', {
id: calculation.getContainerId() + '-options',
class: 'col-5 ' + calculation.getElementClasses( 'options' )
} );
var optionsRowClass = 'row no-gutters align-items-center';
if( !mw.calculators.isMobile() ) {
optionsRowClass += ' mb-2';
}
var optionLabelClass = mw.calculators.isMobile() ? 'col-4' : 'col-3';
var optionValueClass = mw.calculators.isMobile() ? 'col-8' : 'col-9';
var indications = calculation.drug.getIndications();
if( indications.length ) {
var indicationVariable = mw.calculators.getVariable( calculation.getVariableIds().indication );
$options
.append( $( '<div>', {
class: optionsRowClass
} )
.append(
$( '<div>', {
class: optionLabelClass,
html: indicationVariable.getLabelString() + ' '
} ),
$( '<div>', {
class: optionValueClass
} )
.append( indicationVariable.createInput({
class: 'calculator-container-input-DrugDosageCalculator-options',
hideLabel: true,
inline: true
} ) ) ) );
}
var routes = calculation.drug.getRoutes();
if( routes.length ) {
var routeVariable = mw.calculators.getVariable( calculation.getVariableIds().route );
$options
.append( $( '<div>', {
class: optionsRowClass
} )
.append(
$( '<div>', {
class: optionLabelClass,
html: routeVariable.getLabelString() + ' '
} ),
$( '<div>', {
class: optionValueClass
} )
.append( routeVariable.createInput({
class: 'calculator-container-input-DrugDosageCalculator-options',
hideLabel: true,
inline: true
} ) ) ) );
}
// Don't show preparations if there isn't a dose with volume
if( hasVolume ) {
var preparations = calculation.drug.getPreparations();
if( preparations.length ) {
var preparationVariable = mw.calculators.getVariable( calculation.getVariableIds().preparation );
$options
.append( $( '<div>', {
class: optionsRowClass
} )
.append(
$( '<div>', {
class: optionLabelClass,
html: preparationVariable.getLabelString() + ' '
} ),
$( '<div>', {
class: optionValueClass
} )
.append( preparationVariable.createInput({
class: 'calculator-container-input-DrugDosageCalculator-options',
hideLabel: true,
inline: true
} ) ) ) );
}
}
elements.dosage.$container.append( $dose, $options );
// Add elements to the contains array
elements.dosage.contains.push( $dose, $options );
// Iterate over elementTypes since it is in order of rendering
for( var iElementType in elementTypes ) {
var elementType = elementTypes[ iElementType ];
var element = elements[ elementType ];
var $existingContainer = $( '#' + element.id );
if( $existingContainer.length ) {
// If an input within this container has focus (i.e. the user changed a variable input which
// triggered this rerender), don't rerender the element as this would destroy the focus on
// the input.
if( !$.contains( $existingContainer[ 0 ], $( ':focus' )[ 0 ] ) ) {
$existingContainer.replaceWith( element.$container );
} else {
for( var containedElementId in element.contains ) {
var $containedElement = element.contains[ containedElementId ];
var $existingContainedContainer = $( '#' + $containedElement.attr( 'id' ) );
if( $existingContainedContainer.length ) {
if( !$.contains( $existingContainedContainer[ 0 ], $( ':focus' )[ 0 ] ) ) {
$existingContainedContainer.replaceWith( $containedElement );
}
}
}
}
} else {
$( this ).append( elements[ elementType ].$container );
}
}
calculationCount++;
} );
// Activate popovers
$( '[data-toggle="popover"]' ).popover();
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationData = function() {
var inputData = new mw.calculators.objectClasses.CalculationData();
// Add variables created by this calculation
var variableIds = this.getVariableIds();
for( var variableType in variableIds ) {
inputData.variables.optional.push( variableIds[ variableType ] );
}
var dataTypes = inputData.getDataTypes();
// Data is only actually required if it is required by every dosage for the drug.
// Data marked as required by an individual dosage that does not appear in every
// dosage will be converted to optional.
var requiredInputData = new mw.calculators.objectClasses.CalculationData();
// Need a way to tell the first iteration of the loop to initialize the required variables to a value that
// is distinct from the empty array (populated across loop using array intersect, so could become [] and shouldn't
// reinitialize).
var initializeRequiredData = true;
// Iterate through each dosage to determine variable dependency
for( var iDosage in this.drug.dosages ) {
var dosageInputData = this.drug.dosages[ iDosage ].getCalculationData();
inputData = inputData.merge( dosageInputData );
for( var iDataType in dataTypes ) {
var dataType = dataTypes[ iDataType ];
if( initializeRequiredData ) {
requiredInputData[ dataType ].required = inputData[ dataType ].required;
} else {
// Data is only truly required if it is required by all dosage calculations, so use array intersection
requiredInputData[ dataType ].required = requiredInputData[ dataType ].required.filter( function( index ) {
return dosageInputData[ dataType ].required.indexOf( index ) !== -1;
} );
}
}
initializeRequiredData = false;
}
for( var iDataType in dataTypes ) {
var dataType = dataTypes[ iDataType ];
// Move any data marked required in inputData to optional if it not actually required (i.e. doesn't appear
// in requiredInputData).
inputData[ dataType ].optional = inputData[ dataType ].optional.concat( inputData[ dataType ].required.filter( function( index ) {
return requiredInputData[ dataType ].required.indexOf( index ) === -1;
} ) ).filter( mw.calculators.uniqueValues );
inputData[ dataType ].required = requiredInputData[ dataType ].required;
}
return inputData;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getCalculationDataValues = function() {
var data = mw.calculators.objectClasses.AbstractCalculation.prototype.getCalculationDataValues.call( this );
data.drug = this.drug;
data.indication = data[ this.getVariablePrefix() + 'indication' ] !== null ?
mw.calculators.getDrugIndication( mw.calculators.getVariable( this.getVariableIds().indication ).getValue() ) :
null;
delete data[ this.getVariablePrefix() + 'indication' ];
data.preparation = data[ this.getVariablePrefix() + 'preparation' ] !== null ?
this.drug.preparations[ mw.calculators.getVariable( this.getVariableIds().preparation ).getValue() ] :
null;
delete data[ this.getVariablePrefix() + 'preparation' ];
data.route = data[ this.getVariablePrefix() + 'route' ] !== null ?
mw.calculators.getDrugRoute( mw.calculators.getVariable( this.getVariableIds().route ).getValue() ) :
null;
delete data[ this.getVariablePrefix() + 'route' ];
return data;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getClassName = function() {
return 'DrugDosageCalculation';
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getDescription = function() {
var description = this.drug.description ? this.drug.description : '';
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].description ) {
description += description ? '<br/><br/>' : '';
description += this.drug.dosages[ this.activeDosageId ].description;
}
return description;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getInfoButton = function( infoCount ) {
var infoContainerId = this.getContainerId() + '-info';
if( infoCount ) {
infoContainerId += '-' + infoCount;
}
var infoString = 'More information';
infoString += !mw.calculators.isMobile() ? ' about this dose' : '';
return $( '<div>', {
class: this.getElementClasses( 'infoButton' )
} )
.append( $( '<a>', {
'data-toggle': 'collapse',
href: '#' + infoContainerId,
role: 'button',
'aria-expanded': 'false',
'aria-controls': infoContainerId
} )
.append( $( '<i>', {
class: 'far fa-question-circle'
} ), ' ' + infoString ) );
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getProperties = function() {
var inheritedProperties = mw.calculators.objectClasses.AbstractCalculation.prototype.getProperties();
return this.mergeProperties( inheritedProperties, {
required: [
'drug'
],
optional: []
} );
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getReferences = function() {
var references = this.drug.references;
if( this.activeDosageId !== null && this.drug.dosages[ this.activeDosageId ].references.length ) {
references = references
.concat( this.drug.dosages[ this.activeDosageId ].references )
.filter( mw.calculators.uniqueValues );
}
return references;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getSearchString = function() {
return this.drug.name + ' ' + this.drug.color + ' ' + this.drug.getIndications().join( ' ' );
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleHtml = function() {
var $title = $( '<a>', {
class: this.getElementClasses( 'title-name' ),
href: mw.util.getUrl( this.drug.name ),
text: this.getTitleString()
} ).css( 'background-color', '#fff' );
var highlightColor = this.drug.color.getHighlightColor();
if( highlightColor ) {
var highlightContainerAttributes = {
class: this.getElementClasses( 'title-highlight' )
};
var highlightContainerCss = {};
highlightContainerCss[ 'background' ] = highlightColor;
$title = $( '<span>', highlightContainerAttributes ).append( $title ).css( highlightContainerCss );
}
var primaryColor = this.drug.color.getPrimaryColor();
if( primaryColor ) {
var backgroundContainerAttributes = {
class: this.getElementClasses( 'title-background' )
};
var backgroundContainerCss = {};
if( this.drug.color.isStriped() ) {
backgroundContainerCss[ 'background' ] = 'repeating-linear-gradient(135deg,rgba(0,0,0,0),rgba(0,0,0,0)10px,rgba(255,255,255,1)10px,rgba(255,255,255,1)20px),' + primaryColor;
} else {
backgroundContainerCss[ 'background'] = primaryColor;
}
$title = $( '<span>', backgroundContainerAttributes ).append( $title ).css( backgroundContainerCss );
}
return $title;
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getTitleString = function() {
return this.drug ? this.drug.name : '';
}
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableIds = function() {
return {
indication: this.getVariablePrefix() + 'indication',
preparation: this.getVariablePrefix() + 'preparation',
route: this.getVariablePrefix() + 'route'
};
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariableOptions = function( variableId ) {
if( variableId === this.getVariablePrefix() + 'indication' ) {
return this.drug.getIndications();
} else if( variableId === this.getVariablePrefix() + 'preparation' ) {
// Exclude preparations which require dilution
return this.drug.getPreparations( true );
} else if( variableId === this.getVariablePrefix() + 'route' ) {
return this.drug.getRoutes();
}
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.getVariablePrefix = function() {
return this.drug.id + '-';
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.initialize = function() {
if( typeof this.drug === 'string' ) {
var drug = mw.calculators.getDrug( this.drug );
if( !drug ) {
throw new Error( 'DrugDosage references drug "' + this.drug + '" which is not defined' );
}
this.drug = drug;
}
this.activeDosageId = null;
this.updateVariables();
mw.calculators.objectClasses.AbstractCalculation.prototype.initialize.call( this );
};
mw.calculators.objectClasses.DrugDosageCalculation.prototype.updateVariables = function() {
var variableIds = this.getVariableIds();
for( var variableType in variableIds ) {
var variableId = variableIds[ variableType ];
var variableOptions = this.getVariableOptions( variableId );
var variableOptionValues = {};
var defaultOption = 0;
for( var iVariableOption in variableOptions ) {
var variableOption = variableOptions[ iVariableOption ];
defaultOption = variableOption.default ? iVariableOption : defaultOption;
variableOptionValues[ variableOption.id ] = String( variableOption );
}
var defaultValue = variableOptions.length ? variableOptions[ defaultOption ].id : null;
var variable = mw.calculators.getVariable( variableId );
if( !variable ) {
var newVariable = {};
// TODO put this somewhere else
var abbreviation;
if( variableType === 'indication' ) {
abbreviation = 'Use';
} else if( variableType === 'route' ) {
abbreviation = 'Route';
} else if( variableType === 'preparation' ) {
abbreviation = 'Prep';
}
newVariable[ variableId ] = {
name: variableType.charAt(0).toUpperCase() + variableType.slice(1),
abbreviation: abbreviation,
type: 'string',
defaultValue: defaultValue,
options: variableOptionValues
};
mw.calculators.addVariables( newVariable );
} else {
// Probably not ideal to reach into the variable to change these things directly
// Perhaps add helper functions to variable class
mw.calculators.variables[ variableId ].defaultValue = defaultValue;
mw.calculators.variables[ variableId ].options = variableOptionValues;
}
}
};
mw.calculators.addDrugCalculators = function( moduleId, drugCalculatorData, className ) {
className = className ? className : 'DrugDosageCalculator';
for( var drugCalculatorId in drugCalculatorData ) {
drugCalculatorData[ drugCalculatorId ].module = moduleId;
for( var iCalculation in drugCalculatorData[ drugCalculatorId].calculations ) {
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ] = moduleId + '-' +
drugCalculatorData[ drugCalculatorId].calculations[ iCalculation ];
}
}
mw.calculators.addCalculators( moduleId, drugCalculatorData, className );
};
/**
* Class DrugDosageCalculator
* @param {Object} propertyValues
* @returns {mw.calculators.objectClasses.DrugDosageCalculator}
* @constructor
*/
mw.calculators.objectClasses.DrugDosageCalculator = function( propertyValues ) {
mw.calculators.objectClasses.CalculatorObject.call( this, this.getProperties(), propertyValues );
};
mw.calculators.objectClasses.DrugDosageCalculator.prototype = Object.create( mw.calculators.objectClasses.AbstractCalculator.prototype );
mw.calculators.objectClasses.DrugDosageCalculator.prototype.getClassName = function() {
return 'DrugDosageCalculator';
};
}() );